Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 19215

PDB: 9g9y,
chainID: b, resSeq: 503
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 4.91 Å
origomeric count: 54

axial ligand #1: HIS

chainID: b,
resSeq: 249,
Coordination distance[Å]: 1.99
molecule: Cytochrome c1
Organism: Paracoccus denitrificans PD1222

axial ligand #2: MET

chainID: b,
resSeq: 373,
Coordination distance[Å]: 2.165
molecule: same as ligand #1

List of other hemes in pdb:9g9y

ID of heme	Distortion	Axial ligands on heme		Function & structure
9g9y-a-1001	`sad. -0.02 ruf. +0.35 dom. -0.06 bre. +0.37`	HIS	chainID: a, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 54 pocket vol.: 438.0 Å³ d(Fe-oop): 0.018 Å
9g9y-a-1001	`sad. -0.02 ruf. +0.35 dom. -0.06 bre. +0.37`	HIS	chainID: a, resSeq: 198, molecule: Cytochrome b
9g9y-a-1003	`sad. -0.28 ruf. -0.80 dom. +0.44 bre. +0.43`	HIS	chainID: a, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 54 pocket vol.: 428.0 Å³ d(Fe-oop): 0.170 Å
9g9y-a-1003	`sad. -0.28 ruf. -0.80 dom. +0.44 bre. +0.43`	HIS	chainID: a, resSeq: 212, molecule: Cytochrome b
9g9y-d-502	`sad. -0.28 ruf. -0.82 dom. +0.45 bre. +0.43`	HIS	chainID: d, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 54 pocket vol.: 417.0 Å³ d(Fe-oop): 0.164 Å
9g9y-d-502	`sad. -0.28 ruf. -0.82 dom. +0.45 bre. +0.43`	HIS	chainID: d, resSeq: 212, molecule: Cytochrome b
9g9y-d-505	`sad. +0.00 ruf. +0.29 dom. -0.08 bre. +0.36`	HIS	chainID: d, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 54 pocket vol.: 451.0 Å³ d(Fe-oop): 0.029 Å
9g9y-d-505	`sad. +0.00 ruf. +0.29 dom. -0.08 bre. +0.36`	HIS	chainID: d, resSeq: 198, molecule: Cytochrome b
9g9y-e-503	`sad. -0.06 ruf. +0.06 dom. +0.36 bre. +0.31`	HIS	chainID: e, resSeq: 249, molecule: Cytochrome c1	electron transporter oligomeric count: 54 pocket vol.: 439.0 Å³ d(Fe-oop): 0.026 Å
9g9y-e-503	`sad. -0.06 ruf. +0.06 dom. +0.36 bre. +0.31`	MET	chainID: e, resSeq: 373, molecule: Cytochrome c1
9g9y-g-601	`sad. -0.00 ruf. +0.01 dom. +0.00 bre. +0.14`	HIS	chainID: g, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 54 pocket vol.: 671.0 Å³ d(Fe-oop): 0.007 Å
9g9y-g-601	`sad. -0.00 ruf. +0.01 dom. +0.00 bre. +0.14`	HIS	chainID: g, resSeq: 413, molecule: Cytochrome c oxidase subunit 1
9g9y-g-605	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. +0.15`	HIS	chainID: g, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 54 pocket vol.: 758.0 Å³ d(Fe-oop): 0.028 Å
9g9y-g-605	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. +0.15`	Not assigned.
9g9y-k-603	`sad. -0.00 ruf. +0.01 dom. +0.00 bre. +0.14`	HIS	chainID: k, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 54 pocket vol.: 682.0 Å³ d(Fe-oop): 0.007 Å
9g9y-k-603	`sad. -0.00 ruf. +0.01 dom. +0.00 bre. +0.14`	HIS	chainID: k, resSeq: 413, molecule: Cytochrome c oxidase subunit 1
9g9y-k-605	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. +0.15`	HIS	chainID: k, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 54 pocket vol.: 755.0 Å³ d(Fe-oop): 0.030 Å
9g9y-k-605	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. +0.15`	Not assigned.