Browser

PyDISH No: 18423

PDB: 8yz2,
chainID: C, resSeq: 401
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.68 Å
origomeric count: 39

axial ligand #1: MET

chainID: C,
resSeq: 144,
Coordination distance[Å]: 1.751
molecule: Photosynthetic reaction center cytochrome c subunit
Organism: Dinoroseobacter shibae DFL 12 = DSM 16493

axial ligand #2: HIS

chainID: C,
resSeq: 173,
Coordination distance[Å]: 2.623
molecule: same as ligand #1

List of other hemes in pdb:8yz2

ID of heme Distortion Axial ligands on heme Function & structure
8yz2-C-402
sad. -0.08
ruf. -0.01
dom. +0.39
bre. -0.03
HIS chainID: C,
resSeq: 270,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 354.0 Å3
d(Fe-oop): 0.070 Å
Not assigned.
8yz2-C-403
sad. -0.06
ruf. -0.19
dom. -0.11
bre. -0.06
HIS chainID: C,
resSeq: 158,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 286.0 Å3
d(Fe-oop): 0.048 Å
HIS chainID: C, resSeq: 332,
molecule: Photosynthetic reaction center cytochrome c subunit