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PyDISH No: 18420

PDB: 8yy9,
chainID: C, resSeq: 403
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.7 Å
origomeric count: 39

axial ligand #1: HIS

chainID: C,
resSeq: 158,
Coordination distance[Å]: 2.536
molecule: Photosynthetic reaction center cytochrome c subunit
Organism: Dinoroseobacter shibae DFL 12 = DSM 16493

axial ligand #2: HIS

chainID: C,
resSeq: 332,
Coordination distance[Å]: 2.008
molecule: same as ligand #1

List of other hemes in pdb:8yy9

ID of heme Distortion Axial ligands on heme Function & structure
8yy9-C-401
sad. -0.01
ruf. -0.04
dom. -0.17
bre. -0.04
MET chainID: C,
resSeq: 144,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 375.0 Å3
d(Fe-oop): 0.038 Å
HIS chainID: C, resSeq: 173,
molecule: Photosynthetic reaction center cytochrome c subunit
8yy9-C-402
sad. -0.04
ruf. -0.47
dom. +0.49
bre. -0.00
MET chainID: C,
resSeq: 255,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 352.0 Å3
d(Fe-oop): 0.032 Å
HIS chainID: C, resSeq: 270,
molecule: Photosynthetic reaction center cytochrome c subunit