Browser

PyDISH No: 18117

PDB: 8ugh,
chainID: 3P, resSeq: 501
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.1 Å

axial ligand #1: HIS

chainID: 3P,
resSeq: 83,
Coordination distance[Å]: 2.06
molecule: Cytochrome b
Organism: Sus scrofa

axial ligand #2: HIS

chainID: 3P,
resSeq: 182,
Coordination distance[Å]: 2.082
molecule: same as ligand #1

List of other hemes in pdb:8ugh

ID of heme Distortion Axial ligands on heme Function & structure
8ugh-3C-501
sad. -0.08
ruf. -0.27
dom. +0.04
bre. -0.00
HIS chainID: 3C,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 81
pocket vol.: 398.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: 3C, resSeq: 182,
molecule: Cytochrome b
8ugh-3C-502
sad. -0.53
ruf. -0.53
dom. +0.38
bre. +0.06
HIS chainID: 3C,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 81
pocket vol.: 360.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: 3C, resSeq: 196,
molecule: Cytochrome b
8ugh-3D-501
sad. -0.01
ruf. -0.32
dom. +0.18
bre. -0.63
HIS chainID: 3D,
resSeq: 129,
molecule: Cytochrome c1
electron transporter
oligomeric count: 81
pocket vol.: 437.0 Å3
d(Fe-oop): 0.059 Å
MET chainID: 3D, resSeq: 249,
molecule: Cytochrome c1
8ugh-3P-502
sad. -0.49
ruf. -0.60
dom. +0.34
bre. +0.07
HIS chainID: 3P,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 81
pocket vol.: 355.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: 3P, resSeq: 196,
molecule: Cytochrome b
8ugh-3Q-501
sad. -0.00
ruf. -0.69
dom. +0.01
bre. -0.61
HIS chainID: 3Q,
resSeq: 41,
molecule: Cytochrome c1
electron transporter
oligomeric count: 81
pocket vol.: 425.0 Å3
d(Fe-oop): 0.001 Å
MET chainID: 3Q, resSeq: 160,
molecule: Cytochrome c1
8ugh-4A-601
sad. -0.66
ruf. +0.48
dom. +0.56
bre. -0.43
HIS chainID: 4A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 81
pocket vol.: 620.0 Å3
d(Fe-oop): 0.053 Å
HIS chainID: 4A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
8ugh-4A-602
sad. -0.47
ruf. +0.37
dom. +0.64
bre. -0.47
HIS chainID: 4A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 81
pocket vol.: 690.0 Å3
d(Fe-oop): 0.005 Å
Not assigned.