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PyDISH No: 16607

PDB: 8abl,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.1 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 2.002
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.28
molecule: same as ligand #1

List of other hemes in pdb:8abl

ID of heme Distortion Axial ligands on heme Function & structure
8abl-C-501
 sad. +0.08
ruf. -0.29
dom. -0.06
bre. -0.03
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 395.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8abl-C-502
 sad. -0.60
ruf. -0.42
dom. +0.10
bre. +0.02
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 397.0 Å3
d(Fe-oop): 0.083 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8abl-N-501
 sad. +0.08
ruf. -0.29
dom. -0.06
bre. -0.03
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 380.0 Å3
d(Fe-oop): 0.023 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8abl-N-502
 sad. -0.60
ruf. -0.44
dom. +0.06
bre. +0.11
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 388.0 Å3
d(Fe-oop): 0.077 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8abl-O-401
 sad. -0.04
ruf. -0.42
dom. +0.07
bre. -0.30
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 oxidoreductase
oligomeric count: 20
pocket vol.: 421.0 Å3
d(Fe-oop): 0.020 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p