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PyDISH No: 16606

PDB: 8abl,
chainID: C, resSeq: 502
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.1 Å

axial ligand #1: HIS

chainID: C,
resSeq: 96,
Coordination distance[Å]: 2.202
molecule: Cytochrome b
Organism: Yarrowia lipolytica

axial ligand #2: HIS

chainID: C,
resSeq: 197,
Coordination distance[Å]: 2.147
molecule: same as ligand #1

List of other hemes in pdb:8abl

ID of heme Distortion Axial ligands on heme Function & structure
8abl-C-501
sad. +0.08
ruf. -0.29
dom. -0.06
bre. -0.03
HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 20
pocket vol.: 395.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8abl-D-401
sad. -0.03
ruf. -0.43
dom. +0.07
bre. -0.29
HIS chainID: D,
resSeq: 128,
molecule: YALI0A17468p
oxidoreductase
oligomeric count: 20
pocket vol.: 405.0 Å3
d(Fe-oop): 0.022 Å
MET chainID: D, resSeq: 248,
molecule: YALI0A17468p
8abl-N-501
sad. +0.08
ruf. -0.29
dom. -0.06
bre. -0.03
HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 20
pocket vol.: 380.0 Å3
d(Fe-oop): 0.023 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8abl-N-502
sad. -0.60
ruf. -0.44
dom. +0.06
bre. +0.11
HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 20
pocket vol.: 388.0 Å3
d(Fe-oop): 0.077 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8abl-O-401
sad. -0.04
ruf. -0.42
dom. +0.07
bre. -0.30
HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p
oxidoreductase
oligomeric count: 20
pocket vol.: 421.0 Å3
d(Fe-oop): 0.020 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p