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PyDISH No: 16595

PDB: 8abj,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 3.7 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 1.98
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.261
molecule: same as ligand #1

List of other hemes in pdb:8abj

ID of heme Distortion Axial ligands on heme Function & structure
8abj-C-501
 sad. -0.00
ruf. -0.23
dom. -0.05
bre. +0.19
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 380.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8abj-C-502
 sad. -0.59
ruf. -0.32
dom. -0.03
bre. +0.18
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 388.0 Å3
d(Fe-oop): 0.145 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8abj-N-501
 sad. +0.03
ruf. -0.20
dom. -0.09
bre. +0.16
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 395.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8abj-N-502
 sad. -0.59
ruf. -0.33
dom. +0.01
bre. +0.27
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 376.0 Å3
d(Fe-oop): 0.108 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8abj-O-401
 sad. -0.02
ruf. -0.57
dom. +0.10
bre. -0.19
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 oxidoreductase
oligomeric count: 20
pocket vol.: 416.0 Å3
d(Fe-oop): 0.037 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p