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PyDISH No: 12989

PDB: 6j8m,
chainID: N, resSeq: 602
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.9 Å
origomeric count: 13

axial ligand #1: HIS

chainID: N,
resSeq: 376,
Coordination distance[Å]: 2.237
molecule: Cytochrome c oxidase subunit 1
EC number: 1.9.3.1
Organism: Bos taurus

axial ligand #2: PER

chainID: N,
resSeq: 607,
Coordination distance[Å]: 2.264
molecule: PEROXIDE ION

List of other hemes in pdb:6j8m

ID of heme Distortion Axial ligands on heme Function & structure
6j8m-A-601
sad. -0.47
ruf. -0.03
dom. +0.22
bre. -0.25
HIS chainID: A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 562.0 Å3
d(Fe-oop): 0.019 Å
HIS chainID: A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
6j8m-A-602
sad. -0.33
ruf. -0.15
dom. +0.42
bre. -0.25
HIS chainID: A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 660.0 Å3
d(Fe-oop): 0.048 Å
PER chainID: A, resSeq: 607,
molecule: PEROXIDE ION
6j8m-N-601
sad. -0.48
ruf. -0.09
dom. +0.17
bre. -0.27
HIS chainID: N,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 568.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: N, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1