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PyDISH No: 12870

PDB: 6hu9,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.35 Å

axial ligand #1: HIS

chainID: D,
resSeq: 105,
Coordination distance[Å]: 1.99
molecule: Cytochrome c1, heme protein, mitochondrial
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

axial ligand #2: MET

chainID: D,
resSeq: 225,
Coordination distance[Å]: 1.99
molecule: same as ligand #1

List of other hemes in pdb:6hu9

ID of heme Distortion Axial ligands on heme Function & structure
6hu9-C-601
sad. +0.21
ruf. -0.32
dom. -0.13
bre. +0.13
HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 416.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
6hu9-C-602
sad. -0.52
ruf. -0.49
dom. +0.38
bre. +0.14
HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 388.0 Å3
d(Fe-oop): 0.059 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
6hu9-N-601
sad. +0.07
ruf. -0.26
dom. -0.05
bre. +0.10
HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 395.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
6hu9-N-602
sad. -0.53
ruf. -0.39
dom. +0.35
bre. +0.13
HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 379.0 Å3
d(Fe-oop): 0.051 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
6hu9-O-401
sad. -0.01
ruf. -0.59
dom. -0.20
bre. -0.56
HIS chainID: O,
resSeq: 105,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 44
pocket vol.: 419.0 Å3
d(Fe-oop): 0.070 Å
MET chainID: O, resSeq: 225,
molecule: Cytochrome c1, heme protein, mitochondrial
6hu9-a-602
sad. -0.60
ruf. -0.68
dom. +0.52
bre. -0.32
HIS chainID: a,
resSeq: 62,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 44
pocket vol.: 631.0 Å3
d(Fe-oop): 0.059 Å
HIS chainID: a, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
6hu9-a-603
sad. -0.36
ruf. +0.12
dom. +0.56
bre. -0.40
HIS chainID: a,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 44
pocket vol.: 720.0 Å3
d(Fe-oop): 0.002 Å
Not assigned.
6hu9-m-602
sad. -0.76
ruf. -0.27
dom. +0.67
bre. -0.32
HIS chainID: m,
resSeq: 62,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 44
pocket vol.: 633.0 Å3
d(Fe-oop): 0.023 Å
HIS chainID: m, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
6hu9-m-603
sad. -0.42
ruf. +0.24
dom. +0.58
bre. -0.40
HIS chainID: m,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 44
pocket vol.: 677.0 Å3
d(Fe-oop): 0.007 Å
Not assigned.