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PyDISH No: 12966

PDB: 6j40,
chainID: V, resSeq: 201
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.8 Å

axial ligand #1: HIS

chainID: V,
resSeq: 41,
Coordination distance[Å]: 1.948
molecule: Cytochrome c-550
Organism: Chaetoceros gracilis

axial ligand #2: HIS

chainID: V,
resSeq: 92,
Coordination distance[Å]: 1.96
molecule: same as ligand #1

List of other hemes in pdb:6j40

ID of heme Distortion Axial ligands on heme Function & structure
6j40-E-101
 sad. +0.40
ruf. -0.83
dom. +0.52
bre. +0.26
 HIS chainID: E,
resSeq: 24,
molecule: Cytochrome b559 subunit alpha		 electron transporter
oligomeric count: 70
pocket vol.: 517.0 Å3
d(Fe-oop): 0.316 Å
HIS chainID: F, resSeq: 22,
molecule: Cytochrome b559 subunit beta
6j40-e-101
 sad. +0.40
ruf. -0.83
dom. +0.52
bre. +0.26
 HIS chainID: e,
resSeq: 24,
molecule: Cytochrome b559 subunit alpha		 electron transporter
oligomeric count: 70
pocket vol.: 512.0 Å3
d(Fe-oop): 0.315 Å
HIS chainID: f, resSeq: 22,
molecule: Cytochrome b559 subunit beta
6j40-v-201
 sad. +0.56
ruf. -0.89
dom. +0.23
bre. +0.32
 HIS chainID: v,
resSeq: 41,
molecule: Cytochrome c-550		 electron transporter
oligomeric count: 70
pocket vol.: 468.0 Å3
d(Fe-oop): 0.171 Å
HIS chainID: v, resSeq: 92,
molecule: Cytochrome c-550