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PyDISH No: 09877

PDB: 4u3f,
chainID: D, resSeq: 501
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 3.2312 Å

axial ligand #1: HIS

chainID: D,
resSeq: 41,
Coordination distance[Å]: 1.959
molecule: Mitochondrial cytochrome c1, heme protein
EC number: 1.10.2.2
Organism: Gallus gallus

axial ligand #2: MET

chainID: D,
resSeq: 160,
Coordination distance[Å]: 2.293
molecule: same as ligand #1

List of other hemes in pdb:4u3f

ID of heme Distortion Axial ligands on heme Function & structure
4u3f-C-501
sad. +0.13
ruf. -0.42
dom. -0.10
bre. -0.22
HIS chainID: C,
resSeq: 84,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 20
pocket vol.: 407.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
4u3f-C-502
sad. -0.66
ruf. -0.77
dom. +0.24
bre. -0.14
HIS chainID: C,
resSeq: 98,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 20
pocket vol.: 365.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
4u3f-P-402
sad. +0.13
ruf. -0.42
dom. -0.09
bre. -0.23
HIS chainID: P,
resSeq: 84,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 20
pocket vol.: 405.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: P, resSeq: 183,
molecule: Cytochrome b
4u3f-P-403
sad. -0.66
ruf. -0.76
dom. +0.24
bre. -0.14
HIS chainID: P,
resSeq: 98,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 20
pocket vol.: 384.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: P, resSeq: 197,
molecule: Cytochrome b
4u3f-Q-501
sad. -0.05
ruf. -0.01
dom. -0.04
bre. -0.23
HIS chainID: Q,
resSeq: 41,
molecule: Mitochondrial cytochrome c1, heme protein
oxidoreductase
oligomeric count: 20
pocket vol.: 448.0 Å3
d(Fe-oop): 0.031 Å
MET chainID: Q, resSeq: 160,
molecule: Mitochondrial cytochrome c1, heme protein