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PyDISH No: 05209

PDB: 3bng,
chainID: A, resSeq: 513
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.5 Å

axial ligand #1: LYS

chainID: A,
resSeq: 134,
Coordination distance[Å]: 2.148
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Wolinella succinogenes

axial ligand #2: HOH

chainID: A,
resSeq: 1047,
Coordination distance[Å]: 2.151
molecule: water

List of other hemes in pdb:3bng

ID of heme	Distortion	Axial ligands on heme		Function & structure
3bng-A-514	`sad. +0.66 ruf. -0.90 dom. -0.13 bre. -0.08`	HIS	chainID: A, resSeq: 172, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 413.0 Å³ d(Fe-oop): 0.002 Å
3bng-A-514	`sad. +0.66 ruf. -0.90 dom. -0.13 bre. -0.08`	HIS	chainID: A, resSeq: 313, molecule: Cytochrome c-552
3bng-A-515	`sad. -0.35 ruf. -0.98 dom. +0.05 bre. -0.04`	HIS	chainID: A, resSeq: 102, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 400.0 Å³ d(Fe-oop): 0.028 Å
3bng-A-515	`sad. -0.35 ruf. -0.98 dom. +0.05 bre. -0.04`	HIS	chainID: A, resSeq: 215, molecule: Cytochrome c-552
3bng-A-516	`sad. +0.10 ruf. -1.17 dom. +0.23 bre. +0.08`	HIS	chainID: A, resSeq: 299, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 462.0 Å³ d(Fe-oop): 0.022 Å
3bng-A-516	`sad. +0.10 ruf. -1.17 dom. +0.23 bre. +0.08`	HIS	chainID: A, resSeq: 405, molecule: Cytochrome c-552
3bng-A-517	`sad. +0.09 ruf. -1.06 dom. +0.07 bre. -0.08`	HIS	chainID: A, resSeq: 288, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 499.0 Å³ d(Fe-oop): 0.018 Å
3bng-A-517	`sad. +0.09 ruf. -1.06 dom. +0.07 bre. -0.08`	HIS	chainID: A, resSeq: 330, molecule: Cytochrome c-552