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PyDISH No: 05208

PDB: 3bnf,
chainID: A, resSeq: 512
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.7 Å

axial ligand #1: HIS

chainID: A,
resSeq: 288,
Coordination distance[Å]: 1.936
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Wolinella succinogenes

axial ligand #2: HIS

chainID: A,
resSeq: 330,
Coordination distance[Å]: 2.142
molecule: same as ligand #1

List of other hemes in pdb:3bnf

ID of heme	Distortion	Axial ligands on heme		Function & structure
3bnf-A-508	`sad. +0.46 ruf. -0.87 dom. +0.08 bre. -0.15`	LYS	chainID: A, resSeq: 134, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 402.0 Å³ d(Fe-oop): 0.035 Å
3bnf-A-508	`sad. +0.46 ruf. -0.87 dom. +0.08 bre. -0.15`	SO3	chainID: A, resSeq: 1, molecule: SULFITE ION
3bnf-A-509	`sad. +0.63 ruf. -1.00 dom. -0.11 bre. -0.15`	HIS	chainID: A, resSeq: 172, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 406.0 Å³ d(Fe-oop): 0.011 Å
3bnf-A-509	`sad. +0.63 ruf. -1.00 dom. -0.11 bre. -0.15`	HIS	chainID: A, resSeq: 313, molecule: Cytochrome c-552
3bnf-A-510	`sad. -0.38 ruf. -0.98 dom. +0.04 bre. -0.12`	HIS	chainID: A, resSeq: 102, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 396.0 Å³ d(Fe-oop): 0.025 Å
3bnf-A-510	`sad. -0.38 ruf. -0.98 dom. +0.04 bre. -0.12`	HIS	chainID: A, resSeq: 215, molecule: Cytochrome c-552
3bnf-A-511	`sad. +0.13 ruf. -1.03 dom. +0.24 bre. -0.04`	HIS	chainID: A, resSeq: 299, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 428.0 Å³ d(Fe-oop): 0.013 Å
3bnf-A-511	`sad. +0.13 ruf. -1.03 dom. +0.24 bre. -0.04`	HIS	chainID: A, resSeq: 405, molecule: Cytochrome c-552