Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 04833

PDB: 2yyx,
chainID: A, resSeq: 1002
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 35,
Coordination distance[Å]: 1.969
molecule: Cytochrome c3
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'

axial ligand #2: HIS

chainID: A,
resSeq: 52,
Coordination distance[Å]: 1.966
molecule: same as ligand #1

List of other hemes in pdb:2yyx

ID of heme	Distortion	Axial ligands on heme		Function & structure
2yyx-A-1004	`sad. +0.97 ruf. +0.14 dom. +0.03 bre. -0.03`	HIS	chainID: A, resSeq: 70, molecule: Cytochrome c3	electron transporter oligomeric count: 1 pocket vol.: 414.0 Å³ d(Fe-oop): 0.002 Å
2yyx-A-1004	`sad. +0.97 ruf. +0.14 dom. +0.03 bre. -0.03`	HIS	chainID: A, resSeq: 106, molecule: Cytochrome c3
2yyx-A-1001	`sad. +0.10 ruf. -0.87 dom. -0.18 bre. -0.04`	HIS	chainID: A, resSeq: 22, molecule: Cytochrome c3	electron transporter oligomeric count: 1 pocket vol.: 464.0 Å³ d(Fe-oop): 0.017 Å
2yyx-A-1001	`sad. +0.10 ruf. -0.87 dom. -0.18 bre. -0.04`	HIS	chainID: A, resSeq: 34, molecule: Cytochrome c3
2yyx-A-1003	`sad. +0.21 ruf. -0.25 dom. -0.09 bre. -0.08`	HIS	chainID: A, resSeq: 25, molecule: Cytochrome c3	electron transporter oligomeric count: 1 pocket vol.: 506.0 Å³ d(Fe-oop): 0.004 Å
2yyx-A-1003	`sad. +0.21 ruf. -0.25 dom. -0.09 bre. -0.08`	HIS	chainID: A, resSeq: 83, molecule: Cytochrome c3