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PyDISH No: 20141

PDB: 9sej,
chainID: A, resSeq: 601
heme type: B

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.47 Å
origomeric count: 8

axial ligand #1: HIS

chainID: A,
resSeq: 186,
Coordination distance[Å]: 2.006
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
EC number: 7.1.1.7
Organism: Escherichia coli K-12

axial ligand #2: MET

chainID: A,
resSeq: 393,
Coordination distance[Å]: 2.814
molecule: same as ligand #1

List of other hemes in pdb:9sej

ID of heme Distortion Axial ligands on heme Function & structure
9sej-A-603
sad. +1.02
ruf. +0.17
dom. -0.41
bre. -0.09
GLU chainID: A,
resSeq: 445,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
translocase
oligomeric count: 8
pocket vol.: 439.0 Å3
d(Fe-oop): 0.045 Å
Not assigned.
9sej-a-601
sad. -0.41
ruf. +0.68
dom. -0.23
bre. -0.16
HIS chainID: a,
resSeq: 186,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
translocase
oligomeric count: 8
pocket vol.: 441.0 Å3
d(Fe-oop): 0.213 Å
MET chainID: a, resSeq: 393,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
9sej-a-603
sad. +1.02
ruf. +0.17
dom. -0.41
bre. -0.09
GLU chainID: a,
resSeq: 445,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
translocase
oligomeric count: 8
pocket vol.: 430.0 Å3
d(Fe-oop): 0.049 Å
Not assigned.