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PyDISH No: 20140

PDB: 9w2y,
chainID: N, resSeq: 401
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.4 Å
origomeric count: 22

axial ligand #1: HIS

chainID: N,
resSeq: 97,
Coordination distance[Å]: 2.826
molecule: Cytochrome b
Organism: Bos taurus

axial ligand #2: HIS

chainID: N,
resSeq: 196,
Coordination distance[Å]: 2.239
molecule: same as ligand #1

List of other hemes in pdb:9w2y

ID of heme Distortion Axial ligands on heme Function & structure
9w2y-C-401
sad. -0.60
ruf. -0.64
dom. +0.05
bre. -0.10
HIS chainID: C,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 489.0 Å3
d(Fe-oop): 0.116 Å
HIS chainID: C, resSeq: 196,
molecule: Cytochrome b
9w2y-C-402
sad. -0.09
ruf. -0.13
dom. -0.26
bre. -0.17
HIS chainID: C,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 527.0 Å3
d(Fe-oop): 0.253 Å
HIS chainID: C, resSeq: 182,
molecule: Cytochrome b
9w2y-D-301
sad. -0.22
ruf. -0.75
dom. -0.15
bre. -0.08
HIS chainID: D,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 22
pocket vol.: 499.0 Å3
d(Fe-oop): 0.266 Å
MET chainID: D, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial
9w2y-N-402
sad. -0.09
ruf. -0.14
dom. +0.09
bre. -0.18
HIS chainID: N,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 521.0 Å3
d(Fe-oop): 0.175 Å
HIS chainID: N, resSeq: 182,
molecule: Cytochrome b
9w2y-O-301
sad. -0.36
ruf. -0.55
dom. +0.46
bre. -0.13
HIS chainID: O,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 22
pocket vol.: 537.0 Å3
d(Fe-oop): 0.189 Å
MET chainID: O, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial