Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 19232

PDB: 9gae,
chainID: a, resSeq: 515
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.0 Å
origomeric count: 35

axial ligand #1: HIS

chainID: a,
resSeq: 111,
Coordination distance[Å]: 2.249
molecule: Cytochrome b
Organism: Paracoccus denitrificans PD1222

axial ligand #2: HIS

chainID: a,
resSeq: 212,
Coordination distance[Å]: 2.171
molecule: same as ligand #1

List of other hemes in pdb:9gae

ID of heme	Distortion	Axial ligands on heme		Function & structure
9gae-a-505	`sad. +0.02 ruf. +0.07 dom. -0.01 bre. -0.09`	HIS	chainID: a, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 35 pocket vol.: 439.0 Å³ d(Fe-oop): 0.009 Å
9gae-a-505	`sad. +0.02 ruf. +0.07 dom. -0.01 bre. -0.09`	HIS	chainID: a, resSeq: 198, molecule: Cytochrome b
9gae-b-502	`sad. +0.09 ruf. -0.13 dom. -0.02 bre. -0.10`	HIS	chainID: b, resSeq: 249, molecule: Cytochrome c1	electron transporter oligomeric count: 35 pocket vol.: 450.0 Å³ d(Fe-oop): 0.014 Å
9gae-b-502	`sad. +0.09 ruf. -0.13 dom. -0.02 bre. -0.10`	MET	chainID: b, resSeq: 373, molecule: Cytochrome c1
9gae-d-507	`sad. -0.40 ruf. -0.35 dom. +0.32 bre. -0.06`	HIS	chainID: d, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 35 pocket vol.: 438.0 Å³ d(Fe-oop): 0.046 Å
9gae-d-507	`sad. -0.40 ruf. -0.35 dom. +0.32 bre. -0.06`	HIS	chainID: d, resSeq: 212, molecule: Cytochrome b
9gae-d-514	`sad. -0.03 ruf. +0.22 dom. +0.02 bre. -0.08`	HIS	chainID: d, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 35 pocket vol.: 436.0 Å³ d(Fe-oop): 0.033 Å
9gae-d-514	`sad. -0.03 ruf. +0.22 dom. +0.02 bre. -0.08`	HIS	chainID: d, resSeq: 198, molecule: Cytochrome b
9gae-e-504	`sad. -0.34 ruf. -0.62 dom. +0.26 bre. -0.06`	HIS	chainID: e, resSeq: 249, molecule: Cytochrome c1	electron transporter oligomeric count: 35 pocket vol.: 419.0 Å³ d(Fe-oop): 0.068 Å
9gae-e-504	`sad. -0.34 ruf. -0.62 dom. +0.26 bre. -0.06`	MET	chainID: e, resSeq: 373, molecule: Cytochrome c1
9gae-g-606	`sad. -0.00 ruf. +0.02 dom. +0.01 bre. +0.04`	HIS	chainID: g, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 35 pocket vol.: 613.0 Å³ d(Fe-oop): 0.025 Å
9gae-g-606	`sad. -0.00 ruf. +0.02 dom. +0.01 bre. +0.04`	HIS	chainID: g, resSeq: 413, molecule: Cytochrome c oxidase subunit 1
9gae-g-610	`sad. +0.01 ruf. +0.01 dom. +0.03 bre. +0.02`	HIS	chainID: g, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 35 pocket vol.: 738.0 Å³ d(Fe-oop): 0.036 Å
9gae-g-610	`sad. +0.01 ruf. +0.01 dom. +0.03 bre. +0.02`	Not assigned.
9gae-k-604	`sad. -0.00 ruf. +0.01 dom. -0.00 bre. +0.02`	HIS	chainID: k, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 35 pocket vol.: 651.0 Å³ d(Fe-oop): 0.005 Å
9gae-k-604	`sad. -0.00 ruf. +0.01 dom. -0.00 bre. +0.02`	HIS	chainID: k, resSeq: 413, molecule: Cytochrome c oxidase subunit 1
9gae-k-605	`sad. +0.01 ruf. +0.01 dom. +0.02 bre. +0.02`	HIS	chainID: k, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 35 pocket vol.: 759.0 Å³ d(Fe-oop): 0.029 Å
9gae-k-605	`sad. +0.01 ruf. +0.01 dom. +0.02 bre. +0.02`	Not assigned.