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PyDISH No: 18418

PDB: 9es7,
chainID: A, resSeq: 302
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 1.94 Å

axial ligand #1: HIS

chainID: A,
resSeq: 100,
Coordination distance[Å]: 2.382
molecule: Cytochrome b6
Organism: Spinacia oleracea

axial ligand #2: HIS

chainID: A,
resSeq: 202,
Coordination distance[Å]: 2.426
molecule: same as ligand #1

List of other hemes in pdb:9es7

ID of heme Distortion Axial ligands on heme Function & structure
9es7-A-301
sad. -0.08
ruf. +0.03
dom. +0.03
bre. -0.22
HIS chainID: A,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 18
pocket vol.: 483.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: A, resSeq: 187,
molecule: Cytochrome b6
9es7-A-303
sad. +0.56
ruf. -0.04
dom. -0.17
bre. -0.26
HOH chainID: A,
resSeq: 405,
molecule: water
electron transporter
oligomeric count: 18
pocket vol.: 679.0 Å3
d(Fe-oop): 0.107 Å
Not assigned.
9es7-C-301
sad. -0.20
ruf. -0.68
dom. +0.02
bre. -0.21
TYR chainID: C,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 18
pocket vol.: 457.0 Å3
d(Fe-oop): 0.118 Å
HIS chainID: C, resSeq: 25,
molecule: Cytochrome f
9es7-I-301
sad. -0.08
ruf. +0.03
dom. +0.03
bre. -0.22
HIS chainID: I,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 18
pocket vol.: 503.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: I, resSeq: 187,
molecule: Cytochrome b6
9es7-I-302
sad. -0.84
ruf. -0.44
dom. +0.10
bre. -0.16
HIS chainID: I,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 18
pocket vol.: 489.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: I, resSeq: 202,
molecule: Cytochrome b6
9es7-I-303
sad. +0.56
ruf. -0.04
dom. -0.17
bre. -0.26
HOH chainID: I,
resSeq: 405,
molecule: water
electron transporter
oligomeric count: 18
pocket vol.: 654.0 Å3
d(Fe-oop): 0.107 Å
Not assigned.
9es7-K-301
sad. -0.20
ruf. -0.68
dom. +0.02
bre. -0.21
TYR chainID: K,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 18
pocket vol.: 451.0 Å3
d(Fe-oop): 0.118 Å
HIS chainID: K, resSeq: 25,
molecule: Cytochrome f