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PyDISH No: 18148

PDB: 8ugn,
chainID: 3C, resSeq: 501
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.7 Å

axial ligand #1: HIS

chainID: 3C,
resSeq: 83,
Coordination distance[Å]: 2.497
molecule: Cytochrome b
Organism: Sus scrofa

axial ligand #2: HIS

chainID: 3C,
resSeq: 182,
Coordination distance[Å]: 1.925
molecule: same as ligand #1

List of other hemes in pdb:8ugn

ID of heme Distortion Axial ligands on heme Function & structure
8ugn-3C-502
sad. -0.51
ruf. -0.68
dom. +0.30
bre. +0.08
HIS chainID: 3C,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 140
pocket vol.: 422.0 Å3
d(Fe-oop): 0.053 Å
HIS chainID: 3C, resSeq: 196,
molecule: Cytochrome b
8ugn-3D-501
sad. +0.01
ruf. -0.30
dom. +0.34
bre. -0.62
HIS chainID: 3D,
resSeq: 129,
molecule: Cytochrome c1
electron transporter
oligomeric count: 140
pocket vol.: 475.0 Å3
d(Fe-oop): 0.125 Å
MET chainID: 3D, resSeq: 249,
molecule: Cytochrome c1
8ugn-3P-501
sad. +0.14
ruf. -0.37
dom. -0.25
bre. +0.03
HIS chainID: 3P,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 140
pocket vol.: 421.0 Å3
d(Fe-oop): 0.044 Å
HIS chainID: 3P, resSeq: 182,
molecule: Cytochrome b
8ugn-3P-502
sad. -0.49
ruf. -0.65
dom. +0.23
bre. +0.07
HIS chainID: 3P,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 140
pocket vol.: 400.0 Å3
d(Fe-oop): 0.072 Å
HIS chainID: 3P, resSeq: 196,
molecule: Cytochrome b
8ugn-3Q-501
sad. +0.02
ruf. -0.51
dom. +0.27
bre. -0.62
HIS chainID: 3Q,
resSeq: 41,
molecule: Cytochrome c1
electron transporter
oligomeric count: 140
pocket vol.: 477.0 Å3
d(Fe-oop): 0.098 Å
MET chainID: 3Q, resSeq: 160,
molecule: Cytochrome c1
8ugn-4A-604
sad. -0.74
ruf. +0.64
dom. +0.72
bre. -0.38
HIS chainID: 4A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 140
pocket vol.: 637.0 Å3
d(Fe-oop): 0.010 Å
HIS chainID: 4A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
8ugn-4A-605
sad. -0.56
ruf. +0.64
dom. +0.66
bre. -0.43
HIS chainID: 4A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 140
pocket vol.: 696.0 Å3
d(Fe-oop): 0.002 Å
Not assigned.
8ugn-8A-603
sad. -0.70
ruf. +0.57
dom. +0.68
bre. -0.40
HIS chainID: 8A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 140
pocket vol.: 632.0 Å3
d(Fe-oop): 0.019 Å
HIS chainID: 8A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
8ugn-8A-604
sad. -0.53
ruf. +0.23
dom. +0.66
bre. -0.46
HIS chainID: 8A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 140
pocket vol.: 727.0 Å3
d(Fe-oop): 0.004 Å
Not assigned.