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PyDISH No: 18105

PDB: 8vyl,
chainID: D, resSeq: 201
heme type: B

distortion

Protein data

function: oxygen carrier
experiment: X-RAY DIFFRACTION
resolution: 2.02 Å

axial ligand #1: HIS

chainID: D,
resSeq: 92,
Coordination distance[Å]: 2.419
molecule: Hemoglobin subunit beta
Organism: Homo sapiens

axial ligand #2: HOH

chainID: D,
resSeq: 324,
Coordination distance[Å]: 2.127
molecule: water

List of other hemes in pdb:8vyl

ID of heme Distortion Axial ligands on heme Function & structure
8vyl-A-201
sad. +0.15
ruf. -0.45
dom. -0.32
bre. -0.14
HIS chainID: A,
resSeq: 87,
molecule: Hemoglobin subunit alpha
oxygen carrier
oligomeric count: 6
pocket vol.: 560.0 Å3
d(Fe-oop): 0.036 Å
HOH chainID: A, resSeq: 307,
molecule: water
8vyl-C-201
sad. +0.19
ruf. -0.36
dom. -0.38
bre. -0.23
HIS chainID: C,
resSeq: 87,
molecule: Hemoglobin subunit alpha
oxygen carrier
oligomeric count: 6
pocket vol.: 511.0 Å3
d(Fe-oop): 0.000 Å
HOH chainID: C, resSeq: 304,
molecule: water
8vyl-B-201
sad. +0.30
ruf. -0.16
dom. -0.25
bre. -0.16
HIS chainID: B,
resSeq: 92,
molecule: Hemoglobin subunit beta
oxygen carrier
oligomeric count: 6
pocket vol.: 555.0 Å3
d(Fe-oop): 0.037 Å
HOH chainID: B, resSeq: 336,
molecule: water