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PyDISH No: 18104

PDB: 8ugf,
chainID: 3D, resSeq: 501
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.6 Å

axial ligand #1: HIS

chainID: 3D,
resSeq: 129,
Coordination distance[Å]: 1.956
molecule: Cytochrome c1, heme protein, mitochondrial
Organism: Sus scrofa

List of other hemes in pdb:8ugf

ID of heme Distortion Axial ligands on heme Function & structure
8ugf-3C-501
sad. +0.06
ruf. -0.28
dom. +0.04
bre. +0.06
HIS chainID: 3C,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 415.0 Å3
d(Fe-oop): 0.032 Å
HIS chainID: 3C, resSeq: 182,
molecule: Cytochrome b
8ugf-3C-502
sad. -0.54
ruf. -0.78
dom. +0.51
bre. +0.16
HIS chainID: 3C,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 404.0 Å3
d(Fe-oop): 0.005 Å
HIS chainID: 3C, resSeq: 196,
molecule: Cytochrome b
8ugf-3P-501
sad. -0.10
ruf. -0.30
dom. -0.07
bre. +0.07
HIS chainID: 3P,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 459.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: 3P, resSeq: 182,
molecule: Cytochrome b
8ugf-3P-502
sad. -0.57
ruf. -0.84
dom. +0.52
bre. +0.17
HIS chainID: 3P,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 390.0 Å3
d(Fe-oop): 0.000 Å
HIS chainID: 3P, resSeq: 196,
molecule: Cytochrome b
8ugf-3Q-501
sad. -0.01
ruf. -0.49
dom. +0.12
bre. -0.60
HIS chainID: 3Q,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
electron transporter
oligomeric count: 22
pocket vol.: 450.0 Å3
d(Fe-oop): 0.040 Å
MET chainID: 3Q, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial