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PyDISH No: 17887

PDB: 8rxu,
chainID: YYY, resSeq: 607
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.737 Å

axial ligand #1: HIS

chainID: YYY,
resSeq: 392,
Coordination distance[Å]: 1.936
molecule: Octaheme nitrite reductase
Organism: Trichlorobacter ammonificans

axial ligand #2: HIS

chainID: YYY,
resSeq: 500,
Coordination distance[Å]: 1.93
molecule: same as ligand #1

List of other hemes in pdb:8rxu

ID of heme	Distortion	Axial ligands on heme		Function & structure
8rxu-AAA-601	`sad. +0.04 ruf. -0.73 dom. -0.02 bre. -0.32`	HIS	chainID: AAA, resSeq: 46, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 546.0 Å³ d(Fe-oop): 0.014 Å
8rxu-AAA-601	`sad. +0.04 ruf. -0.73 dom. -0.02 bre. -0.32`	HIS	chainID: AAA, resSeq: 73, molecule: Octaheme nitrite reductase
8rxu-AAA-602	`sad. +0.03 ruf. -0.57 dom. -0.06 bre. -0.31`	HIS	chainID: AAA, resSeq: 67, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 368.0 Å³ d(Fe-oop): 0.024 Å
8rxu-AAA-602	`sad. +0.03 ruf. -0.57 dom. -0.06 bre. -0.31`	HIS	chainID: AAA, resSeq: 250, molecule: Octaheme nitrite reductase
8rxu-AAA-603	`sad. +0.23 ruf. -0.94 dom. -0.43 bre. -0.38`	HIS	chainID: AAA, resSeq: 58, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 566.0 Å³ d(Fe-oop): 0.144 Å
8rxu-AAA-603	`sad. +0.23 ruf. -0.94 dom. -0.43 bre. -0.38`	HIS	chainID: AAA, resSeq: 95, molecule: Octaheme nitrite reductase
8rxu-AAA-604	`sad. +0.20 ruf. -0.75 dom. +0.10 bre. -0.30`	LYS	chainID: AAA, resSeq: 206, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 394.0 Å³ d(Fe-oop): 0.031 Å
8rxu-AAA-604	`sad. +0.20 ruf. -0.75 dom. +0.10 bre. -0.30`	PO4	chainID: AAA, resSeq: 610, molecule: PHOSPHATE ION
8rxu-AAA-605	`sad. +0.53 ruf. -1.03 dom. -0.13 bre. -0.25`	HIS	chainID: AAA, resSeq: 247, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 462.0 Å³ d(Fe-oop): 0.052 Å
8rxu-AAA-605	`sad. +0.53 ruf. -1.03 dom. -0.13 bre. -0.25`	HIS	chainID: AAA, resSeq: 407, molecule: Octaheme nitrite reductase
8rxu-AAA-606	`sad. -0.26 ruf. -1.23 dom. +0.19 bre. -0.27`	HIS	chainID: AAA, resSeq: 145, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 425.0 Å³ d(Fe-oop): 0.030 Å
8rxu-AAA-606	`sad. -0.26 ruf. -1.23 dom. +0.19 bre. -0.27`	HIS	chainID: AAA, resSeq: 309, molecule: Octaheme nitrite reductase
8rxu-AAA-607	`sad. +0.70 ruf. -1.19 dom. -0.08 bre. -0.10`	HIS	chainID: AAA, resSeq: 392, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 364.0 Å³ d(Fe-oop): 0.030 Å
8rxu-AAA-607	`sad. +0.70 ruf. -1.19 dom. -0.08 bre. -0.10`	HIS	chainID: AAA, resSeq: 500, molecule: Octaheme nitrite reductase
8rxu-AAA-608	`sad. -0.15 ruf. -1.61 dom. -0.04 bre. -0.16`	HIS	chainID: AAA, resSeq: 381, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 481.0 Å³ d(Fe-oop): 0.000 Å
8rxu-AAA-608	`sad. -0.15 ruf. -1.61 dom. -0.04 bre. -0.16`	HIS	chainID: AAA, resSeq: 424, molecule: Octaheme nitrite reductase
8rxu-MMM-601	`sad. +0.03 ruf. -0.90 dom. -0.04 bre. -0.40`	HIS	chainID: MMM, resSeq: 46, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 536.0 Å³ d(Fe-oop): 0.004 Å
8rxu-MMM-601	`sad. +0.03 ruf. -0.90 dom. -0.04 bre. -0.40`	HIS	chainID: MMM, resSeq: 73, molecule: Octaheme nitrite reductase
8rxu-MMM-602	`sad. -0.07 ruf. -0.29 dom. -0.02 bre. -0.30`	HIS	chainID: MMM, resSeq: 67, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 352.0 Å³ d(Fe-oop): 0.025 Å
8rxu-MMM-602	`sad. -0.07 ruf. -0.29 dom. -0.02 bre. -0.30`	HIS	chainID: MMM, resSeq: 250, molecule: Octaheme nitrite reductase
8rxu-MMM-603	`sad. +0.20 ruf. -0.16 dom. +0.15 bre. -0.37`	HIS	chainID: MMM, resSeq: 58, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 524.0 Å³ d(Fe-oop): 0.086 Å
8rxu-MMM-603	`sad. +0.20 ruf. -0.16 dom. +0.15 bre. -0.37`	HIS	chainID: MMM, resSeq: 95, molecule: Octaheme nitrite reductase
8rxu-MMM-604	`sad. +0.32 ruf. -0.53 dom. +0.15 bre. -0.28`	LYS	chainID: MMM, resSeq: 206, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 394.0 Å³ d(Fe-oop): 0.013 Å
8rxu-MMM-604	`sad. +0.32 ruf. -0.53 dom. +0.15 bre. -0.28`	PO4	chainID: MMM, resSeq: 610, molecule: PHOSPHATE ION
8rxu-MMM-605	`sad. +0.51 ruf. -0.84 dom. -0.19 bre. -0.35`	HIS	chainID: MMM, resSeq: 247, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 468.0 Å³ d(Fe-oop): 0.072 Å
8rxu-MMM-605	`sad. +0.51 ruf. -0.84 dom. -0.19 bre. -0.35`	HIS	chainID: MMM, resSeq: 407, molecule: Octaheme nitrite reductase
8rxu-MMM-606	`sad. -0.24 ruf. -0.67 dom. +0.11 bre. -0.27`	HIS	chainID: MMM, resSeq: 145, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 407.0 Å³ d(Fe-oop): 0.006 Å
8rxu-MMM-606	`sad. -0.24 ruf. -0.67 dom. +0.11 bre. -0.27`	HIS	chainID: MMM, resSeq: 309, molecule: Octaheme nitrite reductase
8rxu-MMM-607	`sad. +0.72 ruf. -0.93 dom. -0.16 bre. -0.14`	HIS	chainID: MMM, resSeq: 392, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 362.0 Å³ d(Fe-oop): 0.060 Å
8rxu-MMM-607	`sad. +0.72 ruf. -0.93 dom. -0.16 bre. -0.14`	HIS	chainID: MMM, resSeq: 500, molecule: Octaheme nitrite reductase
8rxu-MMM-608	`sad. -0.18 ruf. -1.75 dom. +0.13 bre. -0.15`	HIS	chainID: MMM, resSeq: 381, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 460.0 Å³ d(Fe-oop): 0.059 Å
8rxu-MMM-608	`sad. -0.18 ruf. -1.75 dom. +0.13 bre. -0.15`	HIS	chainID: MMM, resSeq: 424, molecule: Octaheme nitrite reductase
8rxu-YYY-601	`sad. -0.05 ruf. -0.94 dom. -0.06 bre. -0.33`	HIS	chainID: YYY, resSeq: 46, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 528.0 Å³ d(Fe-oop): 0.001 Å
8rxu-YYY-601	`sad. -0.05 ruf. -0.94 dom. -0.06 bre. -0.33`	HIS	chainID: YYY, resSeq: 73, molecule: Octaheme nitrite reductase
8rxu-YYY-602	`sad. -0.10 ruf. -0.52 dom. +0.01 bre. -0.37`	HIS	chainID: YYY, resSeq: 67, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 371.0 Å³ d(Fe-oop): 0.026 Å
8rxu-YYY-602	`sad. -0.10 ruf. -0.52 dom. +0.01 bre. -0.37`	HIS	chainID: YYY, resSeq: 250, molecule: Octaheme nitrite reductase
8rxu-YYY-603	`sad. +0.20 ruf. -0.55 dom. -0.09 bre. -0.48`	HIS	chainID: YYY, resSeq: 58, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 542.0 Å³ d(Fe-oop): 0.041 Å
8rxu-YYY-603	`sad. +0.20 ruf. -0.55 dom. -0.09 bre. -0.48`	HIS	chainID: YYY, resSeq: 95, molecule: Octaheme nitrite reductase
8rxu-YYY-604	`sad. +0.37 ruf. -0.49 dom. +0.01 bre. -0.36`	LYS	chainID: YYY, resSeq: 206, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 392.0 Å³ d(Fe-oop): 0.057 Å
8rxu-YYY-604	`sad. +0.37 ruf. -0.49 dom. +0.01 bre. -0.36`	PO4	chainID: YYY, resSeq: 610, molecule: PHOSPHATE ION
8rxu-YYY-605	`sad. +0.52 ruf. -0.95 dom. -0.08 bre. -0.29`	HIS	chainID: YYY, resSeq: 247, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 485.0 Å³ d(Fe-oop): 0.002 Å
8rxu-YYY-605	`sad. +0.52 ruf. -0.95 dom. -0.08 bre. -0.29`	HIS	chainID: YYY, resSeq: 407, molecule: Octaheme nitrite reductase
8rxu-YYY-606	`sad. -0.20 ruf. -1.15 dom. +0.05 bre. -0.25`	HIS	chainID: YYY, resSeq: 145, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 407.0 Å³ d(Fe-oop): 0.040 Å
8rxu-YYY-606	`sad. -0.20 ruf. -1.15 dom. +0.05 bre. -0.25`	HIS	chainID: YYY, resSeq: 309, molecule: Octaheme nitrite reductase
8rxu-YYY-608	`sad. -0.04 ruf. -1.80 dom. +0.13 bre. -0.14`	HIS	chainID: YYY, resSeq: 381, molecule: Octaheme nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 519.0 Å³ d(Fe-oop): 0.069 Å
8rxu-YYY-608	`sad. -0.04 ruf. -1.80 dom. +0.13 bre. -0.14`	HIS	chainID: YYY, resSeq: 424, molecule: Octaheme nitrite reductase