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Protein data
function: translocaseexperiment: ELECTRON MICROSCOPY
resolution: 2.3 Å
axial ligand #1: HIS
chainID: L,resSeq: 86,
Coordination distance[Å]: 2.218
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Mycolicibacterium smegmatis
axial ligand #2: HIS
chainID: L,resSeq: 399,
Coordination distance[Å]: 2.085
molecule: same as ligand #1
List of other hemes in pdb:8ovd
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
8ovd-O-301 |
sad. +0.02 ruf. -0.73 dom. +0.00 bre. -0.04 |
HIS | chainID: O, resSeq: 91, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 24 pocket vol.: 382.0 Å3 d(Fe-oop): 0.016 Å |
| MET | chainID: O, resSeq: 122, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||
8ovd-O-302 |
sad. +0.25 ruf. -0.90 dom. +0.05 bre. +0.04 |
HIS | chainID: O, resSeq: 192, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 24 pocket vol.: 335.0 Å3 d(Fe-oop): 0.012 Å |
| MET | chainID: O, resSeq: 229, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||
8ovd-N-601 |
sad. -0.38 ruf. +0.08 dom. -0.04 bre. -0.05 |
HIS | chainID: N, resSeq: 109, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 24 pocket vol.: 372.0 Å3 d(Fe-oop): 0.103 Å |
| HIS | chainID: N, resSeq: 211, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
8ovd-N-607 |
sad. -1.19 ruf. -0.21 dom. +0.21 bre. +0.32 |
HIS | chainID: N, resSeq: 123, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 24 pocket vol.: 383.0 Å3 d(Fe-oop): 0.130 Å |
| HIS | chainID: N, resSeq: 226, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
8ovd-R-602 |
sad. -0.26 ruf. -0.12 dom. +0.38 bre. -0.43 |
HIS | chainID: R, resSeq: 397, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 24 pocket vol.: 771.0 Å3 d(Fe-oop): 0.004 Å |
| Not assigned. | ||||
8ovd-R-603 |
sad. -0.59 ruf. +0.51 dom. +0.36 bre. -0.52 |
HIS | chainID: R, resSeq: 86, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 24 pocket vol.: 675.0 Å3 d(Fe-oop): 0.060 Å |
| HIS | chainID: R, resSeq: 399, molecule: Cytochrome c oxidase subunit 1 |
|||
8ovd-C-301 |
sad. +0.02 ruf. -0.73 dom. +0.00 bre. -0.04 |
HIS | chainID: C, resSeq: 91, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 24 pocket vol.: 401.0 Å3 d(Fe-oop): 0.016 Å |
| MET | chainID: C, resSeq: 122, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||
8ovd-C-302 |
sad. +0.24 ruf. -0.88 dom. +0.04 bre. +0.03 |
HIS | chainID: C, resSeq: 192, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 24 pocket vol.: 330.0 Å3 d(Fe-oop): 0.012 Å |
| MET | chainID: C, resSeq: 229, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||
8ovd-H-902 |
sad. -0.24 ruf. +0.07 dom. -0.22 bre. +0.00 |
HIS | chainID: H, resSeq: 109, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 24 pocket vol.: 371.0 Å3 d(Fe-oop): 0.106 Å |
| HIS | chainID: H, resSeq: 211, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
8ovd-H-908 |
sad. -1.19 ruf. -0.21 dom. +0.21 bre. +0.32 |
HIS | chainID: H, resSeq: 123, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 24 pocket vol.: 382.0 Å3 d(Fe-oop): 0.130 Å |
| HIS | chainID: H, resSeq: 226, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
8ovd-L-602 |
sad. -0.26 ruf. -0.12 dom. +0.38 bre. -0.43 |
HIS | chainID: L, resSeq: 397, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 24 pocket vol.: 749.0 Å3 d(Fe-oop): 0.005 Å |
| Not assigned. | ||||