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PyDISH No: 17153

PDB: 8gvm,
chainID: N, resSeq: 603
heme type: A

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 1.851 Å
origomeric count: 13

axial ligand #1: HIS

chainID: N,
resSeq: 376,
Coordination distance[Å]: 2.042
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Bos taurus

axial ligand #2: AZI

chainID: N,
resSeq: 608,
Coordination distance[Å]: 2.18
molecule: AZIDE ION

List of other hemes in pdb:8gvm

ID of heme Distortion Axial ligands on heme Function & structure
8gvm-A-601
sad. -0.55
ruf. +0.06
dom. +0.20
bre. -0.10
HIS chainID: A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 523.0 Å3
d(Fe-oop): 0.040 Å
HIS chainID: A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
8gvm-A-602
sad. -0.24
ruf. -0.19
dom. +0.30
bre. -0.09
HIS chainID: A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 722.0 Å3
d(Fe-oop): 0.084 Å
AZI chainID: A, resSeq: 607,
molecule: AZIDE ION
8gvm-N-602
sad. -0.54
ruf. +0.09
dom. +0.21
bre. -0.05
HIS chainID: N,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 531.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: N, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1