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PyDISH No: 16866

PDB: 8ec0,
chainID: j, resSeq: 403
heme type: B

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.3 Å

axial ligand #1: HIS

chainID: j,
resSeq: 82,
Coordination distance[Å]: 2.093
molecule: Cytochrome b
EC number: 7.1.1.8
Organism: Saccharomyces cerevisiae

axial ligand #2: HIS

chainID: j,
resSeq: 183,
Coordination distance[Å]: 2.422
molecule: same as ligand #1

List of other hemes in pdb:8ec0

ID of heme	Distortion	Axial ligands on heme		Function & structure
8ec0-J-403	`sad. +0.01 ruf. -0.15 dom. +0.20 bre. +0.04`	HIS	chainID: J, resSeq: 183, molecule: Cytochrome b	translocase oligomeric count: 30 pocket vol.: 614.0 Å³ d(Fe-oop): 0.079 Å
8ec0-J-403	`sad. +0.01 ruf. -0.15 dom. +0.20 bre. +0.04`	Not assigned.
8ec0-J-404	`sad. -0.05 ruf. -0.31 dom. +0.15 bre. +0.05`	HIS	chainID: J, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 30 pocket vol.: 439.0 Å³ d(Fe-oop): 0.057 Å
8ec0-J-404	`sad. -0.05 ruf. -0.31 dom. +0.15 bre. +0.05`	HIS	chainID: J, resSeq: 197, molecule: Cytochrome b
8ec0-K-602	`sad. -0.00 ruf. +0.28 dom. +0.21 bre. +0.05`	HIS	chainID: K, resSeq: 62, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 30 pocket vol.: 807.0 Å³ d(Fe-oop): 0.085 Å
8ec0-K-602	`sad. -0.00 ruf. +0.28 dom. +0.21 bre. +0.05`	HIS	chainID: K, resSeq: 378, molecule: Cytochrome c oxidase subunit 1
8ec0-K-603	`sad. +0.02 ruf. +0.78 dom. +0.34 bre. +0.10`	HIS	chainID: K, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 30 pocket vol.: 823.0 Å³ d(Fe-oop): 0.134 Å
8ec0-K-603	`sad. +0.02 ruf. +0.78 dom. +0.34 bre. +0.10`	Not assigned.
8ec0-L-401	`sad. -0.00 ruf. -0.75 dom. -0.01 bre. +0.07`	HIS	chainID: L, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 30 pocket vol.: 524.0 Å³ d(Fe-oop): 0.008 Å
8ec0-L-401	`sad. -0.00 ruf. -0.75 dom. -0.01 bre. +0.07`	MET	chainID: L, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial
8ec0-j-404	`sad. -0.04 ruf. -0.66 dom. +0.25 bre. +0.08`	HIS	chainID: j, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 30 pocket vol.: 461.0 Å³ d(Fe-oop): 0.097 Å
8ec0-j-404	`sad. -0.04 ruf. -0.66 dom. +0.25 bre. +0.08`	HIS	chainID: j, resSeq: 197, molecule: Cytochrome b
8ec0-l-401	`sad. -0.01 ruf. -0.76 dom. -0.42 bre. +0.07`	HIS	chainID: l, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 30 pocket vol.: 555.0 Å³ d(Fe-oop): 0.178 Å
8ec0-l-401	`sad. -0.01 ruf. -0.76 dom. -0.42 bre. +0.07`	MET	chainID: l, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial