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PyDISH No: 16830

PDB: 8dzl,
chainID: D, resSeq: 201
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.36 Å

axial ligand #1: HIS

chainID: D,
resSeq: 18,
Coordination distance[Å]: 1.965
molecule: Cytochrome c, somatic
Organism: Rattus norvegicus

axial ligand #2: MET

chainID: D,
resSeq: 80,
Coordination distance[Å]: 2.284
molecule: same as ligand #1

List of other hemes in pdb:8dzl

ID of heme Distortion Axial ligands on heme Function & structure
8dzl-A-201
sad. -0.16
ruf. -0.74
dom. +0.02
bre. -0.03
HIS chainID: A,
resSeq: 18,
molecule: Cytochrome c, somatic
electron transporter
oligomeric count: 1
pocket vol.: 303.0 Å3
d(Fe-oop): 0.032 Å
MET chainID: A, resSeq: 80,
molecule: Cytochrome c, somatic
8dzl-B-201
sad. -0.14
ruf. -0.64
dom. +0.02
bre. -0.01
HIS chainID: B,
resSeq: 18,
molecule: Cytochrome c, somatic
electron transporter
oligomeric count: 1
pocket vol.: 297.0 Å3
d(Fe-oop): 0.033 Å
MET chainID: B, resSeq: 80,
molecule: Cytochrome c, somatic
8dzl-C-201
sad. -0.08
ruf. -0.65
dom. -0.01
bre. -0.01
HIS chainID: C,
resSeq: 18,
molecule: Cytochrome c, somatic
electron transporter
oligomeric count: 1
pocket vol.: 296.0 Å3
d(Fe-oop): 0.018 Å
MET chainID: C, resSeq: 80,
molecule: Cytochrome c, somatic