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PyDISH No: 16719

PDB: 8bpx,
chainID: BE, resSeq: 401
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.09 Å

axial ligand #1: HIS

chainID: BE,
resSeq: 107,
Coordination distance[Å]: 2.066
molecule: Cytochrome c1 2, heme protein, mitochondrial
Organism: Arabidopsis thaliana

axial ligand #2: MET

chainID: BE,
resSeq: 226,
Coordination distance[Å]: 2.587
molecule: same as ligand #1

List of other hemes in pdb:8bpx

ID of heme Distortion Axial ligands on heme Function & structure
8bpx-AC-401
sad. -0.39
ruf. -0.59
dom. +0.30
bre. -0.17
HIS chainID: AC,
resSeq: 102,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 67
pocket vol.: 459.0 Å3
d(Fe-oop): 0.119 Å
HIS chainID: AC, resSeq: 203,
molecule: Cytochrome b
8bpx-AC-402
sad. +0.06
ruf. +0.16
dom. +0.02
bre. -0.06
HIS chainID: AC,
resSeq: 88,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 67
pocket vol.: 424.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: AC, resSeq: 189,
molecule: Cytochrome b
8bpx-AE-401
sad. +0.20
ruf. -0.48
dom. +0.32
bre. -0.11
HIS chainID: AE,
resSeq: 107,
molecule: Cytochrome c1 2, heme protein, mitochondrial
electron transporter
oligomeric count: 67
pocket vol.: 445.0 Å3
d(Fe-oop): 0.245 Å
MET chainID: AE, resSeq: 226,
molecule: Cytochrome c1 2, heme protein, mitochondrial
8bpx-BC-401
sad. -0.29
ruf. -0.26
dom. +0.15
bre. +0.05
HIS chainID: BC,
resSeq: 102,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 67
pocket vol.: 419.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: BC, resSeq: 203,
molecule: Cytochrome b
8bpx-BC-402
sad. +0.12
ruf. +0.25
dom. +0.04
bre. -0.09
HIS chainID: BC,
resSeq: 88,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 67
pocket vol.: 424.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: BC, resSeq: 189,
molecule: Cytochrome b