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PyDISH No: 16601

PDB: 8abk,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.5 Å
origomeric count: 20

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 2.051
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.238
molecule: same as ligand #1

List of other hemes in pdb:8abk

ID of heme Distortion Axial ligands on heme Function & structure
8abk-C-501
 sad. +0.08
ruf. -0.30
dom. -0.05
bre. +0.02
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 388.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8abk-C-502
 sad. -0.55
ruf. -0.37
dom. +0.05
bre. +0.05
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 396.0 Å3
d(Fe-oop): 0.053 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8abk-N-501
 sad. +0.10
ruf. -0.33
dom. -0.01
bre. +0.02
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 400.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8abk-N-502
 sad. -0.53
ruf. -0.35
dom. +0.06
bre. +0.14
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 384.0 Å3
d(Fe-oop): 0.064 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8abk-O-401
 sad. -0.08
ruf. -0.38
dom. +0.05
bre. -0.34
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 translocase
oligomeric count: 20
pocket vol.: 403.0 Å3
d(Fe-oop): 0.020 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p