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PyDISH No: 16571

PDB: 8abf,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.3 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 2.037
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.259
molecule: same as ligand #1

List of other hemes in pdb:8abf

ID of heme Distortion Axial ligands on heme Function & structure
8abf-C-501
 sad. +0.10
ruf. -0.29
dom. -0.06
bre. +0.03
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 372.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8abf-C-502
 sad. -0.57
ruf. -0.35
dom. +0.11
bre. +0.02
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 397.0 Å3
d(Fe-oop): 0.077 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8abf-N-501
 sad. +0.11
ruf. -0.25
dom. -0.08
bre. +0.02
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 400.0 Å3
d(Fe-oop): 0.033 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8abf-N-502
 sad. -0.58
ruf. -0.39
dom. +0.11
bre. +0.12
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 381.0 Å3
d(Fe-oop): 0.024 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8abf-O-401
 sad. -0.05
ruf. -0.46
dom. +0.05
bre. -0.26
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 translocase
oligomeric count: 20
pocket vol.: 428.0 Å3
d(Fe-oop): 0.024 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p