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PyDISH No: 14904

PDB: 7dgs,
chainID: m, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 7.8 Å

axial ligand #1: HIS

chainID: m,
resSeq: 83,
Coordination distance[Å]: 2.194
molecule: Cytochrome b
Organism: Bos taurus

axial ligand #2: HIS

chainID: m,
resSeq: 182,
Coordination distance[Å]: 2.436
molecule: same as ligand #1

List of other hemes in pdb:7dgs

ID of heme Distortion Axial ligands on heme Function & structure
7dgs-m-402
sad. -0.12
ruf. -0.92
dom. +0.55
bre. +0.68
HIS chainID: m,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 485.0 Å3
d(Fe-oop): 0.341 Å
HIS chainID: m, resSeq: 196,
molecule: Cytochrome b
7dgs-o-301
sad. +0.07
ruf. -2.05
dom. +0.24
bre. +0.92
HIS chainID: o,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 80
pocket vol.: 504.0 Å3
d(Fe-oop): 0.515 Å
MET chainID: o, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial
7dgs-y-401
sad. +0.40
ruf. -1.49
dom. +0.63
bre. +1.05
HIS chainID: y,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 492.0 Å3
d(Fe-oop): 0.109 Å
HIS chainID: y, resSeq: 182,
molecule: Cytochrome b
7dgs-y-402
sad. -0.11
ruf. -0.92
dom. +0.55
bre. +0.68
HIS chainID: y,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 495.0 Å3
d(Fe-oop): 0.341 Å
HIS chainID: y, resSeq: 196,
molecule: Cytochrome b
7dgs-z-301
sad. +0.07
ruf. -2.05
dom. +0.24
bre. +0.92
HIS chainID: z,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 80
pocket vol.: 497.0 Å3
d(Fe-oop): 0.514 Å
MET chainID: z, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial
7dgs-A9-601
sad. -0.59
ruf. -0.27
dom. +0.29
bre. +0.04
HIS chainID: A9,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 80
pocket vol.: 616.0 Å3
d(Fe-oop): 0.041 Å
HIS chainID: A9, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
7dgs-A9-602
sad. -0.27
ruf. -0.21
dom. +0.31
bre. -0.11
HIS chainID: A9,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 80
pocket vol.: 754.0 Å3
d(Fe-oop): 0.024 Å
Not assigned.