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PyDISH No: 13296

PDB: 6lum,
chainID: H, resSeq: 202
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.84 Å

axial ligand #1: HIS

chainID: G,
resSeq: 47,
Coordination distance[Å]: 2.559
molecule: Succinate dehydrogenase subunit C
Organism: Mycolicibacterium smegmatis MC2 51

axial ligand #2: HIS

chainID: H,
resSeq: 65,
Coordination distance[Å]: 2.598
molecule: Succinate dehydrogenase subunit D
Organism: Mycolicibacterium smegmatis MC2 51

List of other hemes in pdb:6lum

ID of heme Distortion Axial ligands on heme Function & structure
6lum-D-201
sad. -1.00
ruf. +0.06
dom. +0.06
bre. +0.06
HIS chainID: C,
resSeq: 87,
molecule: Succinate dehydrogenase subunit C
electron transporter
oligomeric count: 15
pocket vol.: 500.0 Å3
d(Fe-oop): 0.097 Å
HIS chainID: D, resSeq: 107,
molecule: Succinate dehydrogenase subunit D
6lum-D-202
sad. +0.42
ruf. -0.28
dom. -0.33
bre. +0.21
HIS chainID: C,
resSeq: 47,
molecule: Succinate dehydrogenase subunit C
electron transporter
oligomeric count: 15
pocket vol.: 435.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: D, resSeq: 65,
molecule: Succinate dehydrogenase subunit D
6lum-H-203
sad. -1.00
ruf. -0.17
dom. -0.12
bre. +0.09
HIS chainID: G,
resSeq: 87,
molecule: Succinate dehydrogenase subunit C
electron transporter
oligomeric count: 15
pocket vol.: 485.0 Å3
d(Fe-oop): 0.082 Å
HIS chainID: H, resSeq: 107,
molecule: Succinate dehydrogenase subunit D
6lum-M-201
sad. -0.96
ruf. +0.18
dom. +0.11
bre. +0.02
HIS chainID: M,
resSeq: 87,
molecule: Succinate dehydrogenase subunit C
electron transporter
oligomeric count: 15
pocket vol.: 493.0 Å3
d(Fe-oop): 0.120 Å
HIS chainID: N, resSeq: 107,
molecule: Succinate dehydrogenase subunit D
6lum-N-202
sad. +0.44
ruf. -0.07
dom. -0.13
bre. +0.12
HIS chainID: M,
resSeq: 47,
molecule: Succinate dehydrogenase subunit C
electron transporter
oligomeric count: 15
pocket vol.: 419.0 Å3
d(Fe-oop): 0.010 Å
HIS chainID: N, resSeq: 65,
molecule: Succinate dehydrogenase subunit D