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PyDISH No: 13295

PDB: 6lum,
chainID: D, resSeq: 202
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.84 Å

axial ligand #1: HIS

chainID: C,
resSeq: 47,
Coordination distance[Å]: 1.928
molecule: Succinate dehydrogenase subunit C
Organism: Mycolicibacterium smegmatis MC2 51

axial ligand #2: HIS

chainID: D,
resSeq: 65,
Coordination distance[Å]: 2.646
molecule: Succinate dehydrogenase subunit D
Organism: Mycolicibacterium smegmatis MC2 51

List of other hemes in pdb:6lum

ID of heme	Distortion	Axial ligands on heme		Function & structure
6lum-D-201	`sad. -1.00 ruf. +0.06 dom. +0.06 bre. +0.06`	HIS	chainID: C, resSeq: 87, molecule: Succinate dehydrogenase subunit C	electron transporter oligomeric count: 15 pocket vol.: 500.0 Å³ d(Fe-oop): 0.097 Å
6lum-D-201	`sad. -1.00 ruf. +0.06 dom. +0.06 bre. +0.06`	HIS	chainID: D, resSeq: 107, molecule: Succinate dehydrogenase subunit D
6lum-H-202	`sad. +0.44 ruf. -0.07 dom. -0.13 bre. +0.12`	HIS	chainID: G, resSeq: 47, molecule: Succinate dehydrogenase subunit C	electron transporter oligomeric count: 15 pocket vol.: 460.0 Å³ d(Fe-oop): 0.010 Å
6lum-H-202	`sad. +0.44 ruf. -0.07 dom. -0.13 bre. +0.12`	HIS	chainID: H, resSeq: 65, molecule: Succinate dehydrogenase subunit D
6lum-H-203	`sad. -1.00 ruf. -0.17 dom. -0.12 bre. +0.09`	HIS	chainID: G, resSeq: 87, molecule: Succinate dehydrogenase subunit C	electron transporter oligomeric count: 15 pocket vol.: 485.0 Å³ d(Fe-oop): 0.082 Å
6lum-H-203	`sad. -1.00 ruf. -0.17 dom. -0.12 bre. +0.09`	HIS	chainID: H, resSeq: 107, molecule: Succinate dehydrogenase subunit D
6lum-M-201	`sad. -0.96 ruf. +0.18 dom. +0.11 bre. +0.02`	HIS	chainID: M, resSeq: 87, molecule: Succinate dehydrogenase subunit C	electron transporter oligomeric count: 15 pocket vol.: 493.0 Å³ d(Fe-oop): 0.120 Å
6lum-M-201	`sad. -0.96 ruf. +0.18 dom. +0.11 bre. +0.02`	HIS	chainID: N, resSeq: 107, molecule: Succinate dehydrogenase subunit D
6lum-N-202	`sad. +0.44 ruf. -0.07 dom. -0.13 bre. +0.12`	HIS	chainID: M, resSeq: 47, molecule: Succinate dehydrogenase subunit C	electron transporter oligomeric count: 15 pocket vol.: 419.0 Å³ d(Fe-oop): 0.010 Å
6lum-N-202	`sad. +0.44 ruf. -0.07 dom. -0.13 bre. +0.12`	HIS	chainID: N, resSeq: 65, molecule: Succinate dehydrogenase subunit D