Browser

PyDISH No: 11973

PDB: 5yem,
chainID: C, resSeq: 703
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.49 Å
origomeric count: 4

axial ligand #1: TYR

chainID: C,
resSeq: 369,
Coordination distance[Å]: 1.968
molecule: Catalase
EC number: 1.11.1.6
Organism: Mycothermus thermophilus

axial ligand #2: HOH

chainID: C,
resSeq: 1264,
Coordination distance[Å]: 2.632
molecule: water

List of other hemes in pdb:5yem

ID of heme Distortion Axial ligands on heme Function & structure
5yem-A-704
sad. -0.09
ruf. -0.42
dom. -0.01
bre. -0.12
TYR chainID: A,
resSeq: 369,
molecule: Catalase
oxidoreductase
oligomeric count: 4
pocket vol.: 361.0 Å3
d(Fe-oop): 0.065 Å
HOH chainID: A, resSeq: 1277,
molecule: water
5yem-B-703
sad. -0.13
ruf. -0.35
dom. -0.05
bre. -0.25
TYR chainID: B,
resSeq: 369,
molecule: Catalase
oxidoreductase
oligomeric count: 4
pocket vol.: 358.0 Å3
d(Fe-oop): 0.068 Å
HOH chainID: B, resSeq: 1249,
molecule: water
5yem-D-703
sad. -0.08
ruf. -0.46
dom. -0.05
bre. -0.17
TYR chainID: D,
resSeq: 369,
molecule: Catalase
oxidoreductase
oligomeric count: 4
pocket vol.: 357.0 Å3
d(Fe-oop): 0.066 Å
HOH chainID: D, resSeq: 1218,
molecule: water