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PyDISH No: 10853

PDB: 5gth,
chainID: V, resSeq: 202
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.5 Å

axial ligand #1: HIS

chainID: V,
resSeq: 41,
Coordination distance[Å]: 2.084
molecule: Cytochrome c-550
Organism: Thermosynechococcus vulcanus

axial ligand #2: HIS

chainID: V,
resSeq: 92,
Coordination distance[Å]: 2.101
molecule: same as ligand #1

List of other hemes in pdb:5gth

ID of heme Distortion Axial ligands on heme Function & structure
5gth-E-103
sad. +0.81
ruf. -0.19
dom. +0.12
bre. -0.03
HIS chainID: E,
resSeq: 23,
molecule: Cytochrome b559 subunit alpha
electron transporter
oligomeric count: 20
pocket vol.: 457.0 Å3
d(Fe-oop): 0.080 Å
HIS chainID: F, resSeq: 24,
molecule: Cytochrome b559 subunit beta
5gth-e-103
sad. +0.52
ruf. -0.29
dom. +0.17
bre. -0.05
HIS chainID: e,
resSeq: 23,
molecule: Cytochrome b559 subunit alpha
electron transporter
oligomeric count: 19
pocket vol.: 485.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: f, resSeq: 24,
molecule: Cytochrome b559 subunit beta
5gth-v-201
sad. +0.23
ruf. -0.68
dom. -0.02
bre. -0.01
HIS chainID: v,
resSeq: 41,
molecule: Cytochrome c-550
electron transporter
oligomeric count: 19
pocket vol.: 439.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: v, resSeq: 92,
molecule: Cytochrome c-550