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PyDISH No: 10626

PDB: 5de0,
chainID: B, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.24 Å
origomeric count: 2

axial ligand #1: HIS

chainID: B,
resSeq: 213,
Coordination distance[Å]: 2.553
molecule: Deferrochelatase
Organism: Vibrio cholerae

axial ligand #2: HOH

chainID: B,
resSeq: 546,
Coordination distance[Å]: 2.814
molecule: water

List of other hemes in pdb:5de0

ID of heme Distortion Axial ligands on heme Function & structure
5de0-A-401
sad. +0.37
ruf. +0.33
dom. -0.01
bre. -0.28
HIS chainID: A,
resSeq: 213,
molecule: Deferrochelatase
oxidoreductase
oligomeric count: 2
pocket vol.: 435.0 Å3
d(Fe-oop): 0.023 Å
Not assigned.
5de0-C-401
sad. +0.36
ruf. -0.57
dom. +0.19
bre. -0.23
HIS chainID: C,
resSeq: 213,
molecule: Deferrochelatase
oxidoreductase
oligomeric count: 2
pocket vol.: 452.0 Å3
d(Fe-oop): 0.025 Å
HOH chainID: C, resSeq: 547,
molecule: water
5de0-D-401
sad. +0.33
ruf. +0.45
dom. -0.15
bre. -0.26
HIS chainID: D,
resSeq: 213,
molecule: Deferrochelatase
oxidoreductase
oligomeric count: 2
pocket vol.: 459.0 Å3
d(Fe-oop): 0.003 Å
Not assigned.