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PyDISH No: 10625

PDB: 5de0,
chainID: A, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.24 Å

axial ligand #1: HIS

chainID: A,
resSeq: 213,
Coordination distance[Å]: 2.544
molecule: Deferrochelatase
Organism: Vibrio cholerae

List of other hemes in pdb:5de0

ID of heme Distortion Axial ligands on heme Function & structure
5de0-B-401
 sad. +0.42
ruf. -0.55
dom. +0.16
bre. -0.24
 HIS chainID: B,
resSeq: 213,
molecule: Deferrochelatase		 oxidoreductase
oligomeric count: 2
pocket vol.: 457.0 Å3
d(Fe-oop): 0.087 Å
HOH chainID: B, resSeq: 546,
molecule: water
5de0-C-401
 sad. +0.36
ruf. -0.57
dom. +0.19
bre. -0.23
 HIS chainID: C,
resSeq: 213,
molecule: Deferrochelatase		 oxidoreductase
oligomeric count: 2
pocket vol.: 452.0 Å3
d(Fe-oop): 0.025 Å
HOH chainID: C, resSeq: 547,
molecule: water
5de0-D-401
 sad. +0.33
ruf. +0.45
dom. -0.15
bre. -0.26
 HIS chainID: D,
resSeq: 213,
molecule: Deferrochelatase		 oxidoreductase
oligomeric count: 2
pocket vol.: 459.0 Å3
d(Fe-oop): 0.003 Å
Not assigned.