Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 09390

PDB: 4pd4,
chainID: C, resSeq: 4001
heme type: B

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 3.04 Å

axial ligand #1: HIS

chainID: C,
resSeq: 82,
Coordination distance[Å]: 1.923
molecule: Cytochrome b
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

axial ligand #2: HIS

chainID: C,
resSeq: 183,
Coordination distance[Å]: 1.986
molecule: same as ligand #1

List of other hemes in pdb:4pd4

ID of heme	Distortion	Axial ligands on heme		Function & structure
4pd4-C-4002	`sad. -0.62 ruf. -1.20 dom. -0.03 bre. -0.01`	HIS	chainID: C, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 22 pocket vol.: 383.0 Å³ d(Fe-oop): 0.074 Å
4pd4-C-4002	`sad. -0.62 ruf. -1.20 dom. -0.03 bre. -0.01`	HIS	chainID: C, resSeq: 197, molecule: Cytochrome b
4pd4-D-401	`sad. +0.05 ruf. -0.28 dom. -0.02 bre. -0.30`	HIS	chainID: D, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 22 pocket vol.: 478.0 Å³ d(Fe-oop): 0.081 Å
4pd4-D-401	`sad. +0.05 ruf. -0.28 dom. -0.02 bre. -0.30`	MET	chainID: D, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial