Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 08930

PDB: 4l38,
chainID: A, resSeq: 607
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: HIS

chainID: A,
resSeq: 30,
Coordination distance[Å]: 1.963
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.2
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 70,
Coordination distance[Å]: 1.955
molecule: same as ligand #1

List of other hemes in pdb:4l38

ID of heme	Distortion	Axial ligands on heme		Function & structure
4l38-A-601	`sad. +0.56 ruf. -0.53 dom. +0.00 bre. -0.34`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 411.0 Å³ d(Fe-oop): 0.003 Å
4l38-A-601	`sad. +0.56 ruf. -0.53 dom. +0.00 bre. -0.34`	NO2	chainID: A, resSeq: 609, molecule: NITRITE ION
4l38-A-602	`sad. +1.07 ruf. -0.50 dom. -0.09 bre. -0.26`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 479.0 Å³ d(Fe-oop): 0.002 Å
4l38-A-602	`sad. +1.07 ruf. -0.50 dom. -0.09 bre. -0.26`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
4l38-A-603	`sad. -0.22 ruf. -0.88 dom. +0.11 bre. -0.34`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 408.0 Å³ d(Fe-oop): 0.008 Å
4l38-A-603	`sad. -0.22 ruf. -0.88 dom. +0.11 bre. -0.34`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
4l38-A-604	`sad. +0.73 ruf. -0.86 dom. -0.24 bre. -0.25`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 443.0 Å³ d(Fe-oop): 0.015 Å
4l38-A-604	`sad. +0.73 ruf. -0.86 dom. -0.24 bre. -0.25`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
4l38-A-605	`sad. -0.38 ruf. -1.22 dom. +0.07 bre. -0.51`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 464.0 Å³ d(Fe-oop): 0.001 Å
4l38-A-605	`sad. -0.38 ruf. -1.22 dom. +0.07 bre. -0.51`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
4l38-A-606	`sad. -0.15 ruf. -0.65 dom. -0.07 bre. -0.39`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 361.0 Å³ d(Fe-oop): 0.008 Å
4l38-A-606	`sad. -0.15 ruf. -0.65 dom. -0.07 bre. -0.39`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
4l38-A-608	`sad. -0.00 ruf. -0.50 dom. -0.11 bre. -0.42`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 433.0 Å³ d(Fe-oop): 0.013 Å
4l38-A-608	`sad. -0.00 ruf. -0.50 dom. -0.11 bre. -0.42`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
4l38-B-601	`sad. +0.54 ruf. -0.51 dom. +0.02 bre. -0.28`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 385.0 Å³ d(Fe-oop): 0.009 Å
4l38-B-601	`sad. +0.54 ruf. -0.51 dom. +0.02 bre. -0.28`	NO2	chainID: B, resSeq: 609, molecule: NITRITE ION
4l38-B-602	`sad. +1.07 ruf. -0.49 dom. -0.11 bre. -0.17`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 489.0 Å³ d(Fe-oop): 0.003 Å
4l38-B-602	`sad. +1.07 ruf. -0.49 dom. -0.11 bre. -0.17`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
4l38-B-603	`sad. -0.22 ruf. -0.84 dom. +0.13 bre. -0.23`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 409.0 Å³ d(Fe-oop): 0.007 Å
4l38-B-603	`sad. -0.22 ruf. -0.84 dom. +0.13 bre. -0.23`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
4l38-B-604	`sad. +0.74 ruf. -0.79 dom. -0.21 bre. -0.20`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 458.0 Å³ d(Fe-oop): 0.014 Å
4l38-B-604	`sad. +0.74 ruf. -0.79 dom. -0.21 bre. -0.20`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
4l38-B-605	`sad. -0.40 ruf. -1.18 dom. -0.01 bre. -0.45`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 484.0 Å³ d(Fe-oop): 0.001 Å
4l38-B-605	`sad. -0.40 ruf. -1.18 dom. -0.01 bre. -0.45`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
4l38-B-606	`sad. -0.16 ruf. -0.57 dom. -0.10 bre. -0.36`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 342.0 Å³ d(Fe-oop): 0.005 Å
4l38-B-606	`sad. -0.16 ruf. -0.57 dom. -0.10 bre. -0.36`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
4l38-B-607	`sad. +0.32 ruf. -0.61 dom. -0.09 bre. -0.36`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 491.0 Å³ d(Fe-oop): 0.000 Å
4l38-B-607	`sad. +0.32 ruf. -0.61 dom. -0.09 bre. -0.36`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
4l38-B-608	`sad. -0.09 ruf. -0.62 dom. -0.14 bre. -0.43`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 412.0 Å³ d(Fe-oop): 0.016 Å
4l38-B-608	`sad. -0.09 ruf. -0.62 dom. -0.14 bre. -0.43`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase