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PyDISH No: 08924

PDB: 4l38,
chainID: A, resSeq: 601
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: LYS

chainID: A,
resSeq: 188,
Coordination distance[Å]: 1.924
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.2
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: NO2

chainID: A,
resSeq: 609,
Coordination distance[Å]: 1.876
molecule: NITRITE ION

List of other hemes in pdb:4l38

ID of heme Distortion Axial ligands on heme Function & structure
4l38-A-602
sad. +1.07
ruf. -0.50
dom. -0.09
bre. -0.26
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 479.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
4l38-A-603
sad. -0.22
ruf. -0.88
dom. +0.11
bre. -0.34
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 408.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
4l38-A-604
sad. +0.73
ruf. -0.86
dom. -0.24
bre. -0.25
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 443.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
4l38-A-605
sad. -0.38
ruf. -1.22
dom. +0.07
bre. -0.51
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 464.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
4l38-A-606
sad. -0.15
ruf. -0.65
dom. -0.07
bre. -0.39
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 361.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
4l38-A-607
sad. +0.41
ruf. -0.69
dom. -0.10
bre. -0.36
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 517.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
4l38-A-608
sad. -0.00
ruf. -0.50
dom. -0.11
bre. -0.42
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 433.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
4l38-B-601
sad. +0.54
ruf. -0.51
dom. +0.02
bre. -0.28
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 385.0 Å3
d(Fe-oop): 0.009 Å
NO2 chainID: B, resSeq: 609,
molecule: NITRITE ION
4l38-B-602
sad. +1.07
ruf. -0.49
dom. -0.11
bre. -0.17
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 489.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
4l38-B-603
sad. -0.22
ruf. -0.84
dom. +0.13
bre. -0.23
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 409.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
4l38-B-604
sad. +0.74
ruf. -0.79
dom. -0.21
bre. -0.20
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 458.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
4l38-B-605
sad. -0.40
ruf. -1.18
dom. -0.01
bre. -0.45
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 484.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
4l38-B-606
sad. -0.16
ruf. -0.57
dom. -0.10
bre. -0.36
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 342.0 Å3
d(Fe-oop): 0.005 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
4l38-B-607
sad. +0.32
ruf. -0.61
dom. -0.09
bre. -0.36
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 491.0 Å3
d(Fe-oop): 0.000 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
4l38-B-608
sad. -0.09
ruf. -0.62
dom. -0.14
bre. -0.43
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 412.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase