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Protein data
function: oxidoreductaseexperiment: X-RAY DIFFRACTION
resolution: 1.8 Å
axial ligand #1: LYS
chainID: A,resSeq: 188,
Coordination distance[Å]: 1.924
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.2
Organism: Thioalkalivibrio nitratireducens
axial ligand #2: NO2
chainID: A,resSeq: 609,
Coordination distance[Å]: 1.876
molecule: NITRITE ION
List of other hemes in pdb:4l38
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
4l38-A-602 |
sad. +1.07 ruf. -0.50 dom. -0.09 bre. -0.26 |
HIS | chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 479.0 Å3 d(Fe-oop): 0.002 Å |
| HIS | chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase |
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4l38-A-603 |
sad. -0.22 ruf. -0.88 dom. +0.11 bre. -0.34 |
HIS | chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 408.0 Å3 d(Fe-oop): 0.008 Å |
| HIS | chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase |
|||
4l38-A-604 |
sad. +0.73 ruf. -0.86 dom. -0.24 bre. -0.25 |
HIS | chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 443.0 Å3 d(Fe-oop): 0.015 Å |
| HIS | chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase |
|||
4l38-A-605 |
sad. -0.38 ruf. -1.22 dom. +0.07 bre. -0.51 |
HIS | chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 464.0 Å3 d(Fe-oop): 0.001 Å |
| HIS | chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase |
|||
4l38-A-606 |
sad. -0.15 ruf. -0.65 dom. -0.07 bre. -0.39 |
HIS | chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 361.0 Å3 d(Fe-oop): 0.008 Å |
| HIS | chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase |
|||
4l38-A-607 |
sad. +0.41 ruf. -0.69 dom. -0.10 bre. -0.36 |
HIS | chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 517.0 Å3 d(Fe-oop): 0.007 Å |
| HIS | chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase |
|||
4l38-A-608 |
sad. -0.00 ruf. -0.50 dom. -0.11 bre. -0.42 |
HIS | chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 433.0 Å3 d(Fe-oop): 0.013 Å |
| HIS | chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase |
|||
4l38-B-601 |
sad. +0.54 ruf. -0.51 dom. +0.02 bre. -0.28 |
LYS | chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 385.0 Å3 d(Fe-oop): 0.009 Å |
| NO2 | chainID: B, resSeq: 609, molecule: NITRITE ION |
|||
4l38-B-602 |
sad. +1.07 ruf. -0.49 dom. -0.11 bre. -0.17 |
HIS | chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 489.0 Å3 d(Fe-oop): 0.003 Å |
| HIS | chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase |
|||
4l38-B-603 |
sad. -0.22 ruf. -0.84 dom. +0.13 bre. -0.23 |
HIS | chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 409.0 Å3 d(Fe-oop): 0.007 Å |
| HIS | chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase |
|||
4l38-B-604 |
sad. +0.74 ruf. -0.79 dom. -0.21 bre. -0.20 |
HIS | chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 458.0 Å3 d(Fe-oop): 0.014 Å |
| HIS | chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase |
|||
4l38-B-605 |
sad. -0.40 ruf. -1.18 dom. -0.01 bre. -0.45 |
HIS | chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 484.0 Å3 d(Fe-oop): 0.001 Å |
| HIS | chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase |
|||
4l38-B-606 |
sad. -0.16 ruf. -0.57 dom. -0.10 bre. -0.36 |
HIS | chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 342.0 Å3 d(Fe-oop): 0.005 Å |
| HIS | chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase |
|||
4l38-B-607 |
sad. +0.32 ruf. -0.61 dom. -0.09 bre. -0.36 |
HIS | chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 491.0 Å3 d(Fe-oop): 0.000 Å |
| HIS | chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase |
|||
4l38-B-608 |
sad. -0.09 ruf. -0.62 dom. -0.14 bre. -0.43 |
HIS | chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 412.0 Å3 d(Fe-oop): 0.016 Å |
| HIS | chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase |
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