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PyDISH No: 05219

PDB: 3bnj,
chainID: A, resSeq: 513
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.3 Å

axial ligand #1: LYS

chainID: A,
resSeq: 134,
Coordination distance[Å]: 2.115
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Wolinella succinogenes

axial ligand #2: SO3

chainID: A,
resSeq: 508,
Coordination distance[Å]: 2.193
molecule: SULFITE ION

List of other hemes in pdb:3bnj

ID of heme	Distortion	Axial ligands on heme		Function & structure
3bnj-A-514	`sad. +0.58 ruf. -0.97 dom. -0.07 bre. +0.04`	HIS	chainID: A, resSeq: 172, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 373.0 Å³ d(Fe-oop): 0.027 Å
3bnj-A-514	`sad. +0.58 ruf. -0.97 dom. -0.07 bre. +0.04`	HIS	chainID: A, resSeq: 313, molecule: Cytochrome c-552
3bnj-A-515	`sad. -0.37 ruf. -1.03 dom. +0.09 bre. +0.05`	HIS	chainID: A, resSeq: 102, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 384.0 Å³ d(Fe-oop): 0.028 Å
3bnj-A-515	`sad. -0.37 ruf. -1.03 dom. +0.09 bre. +0.05`	HIS	chainID: A, resSeq: 215, molecule: Cytochrome c-552
3bnj-A-516	`sad. +0.13 ruf. -1.14 dom. +0.24 bre. +0.09`	HIS	chainID: A, resSeq: 299, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 419.0 Å³ d(Fe-oop): 0.010 Å
3bnj-A-516	`sad. +0.13 ruf. -1.14 dom. +0.24 bre. +0.09`	HIS	chainID: A, resSeq: 405, molecule: Cytochrome c-552
3bnj-A-517	`sad. +0.01 ruf. -0.89 dom. +0.12 bre. -0.07`	HIS	chainID: A, resSeq: 288, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 476.0 Å³ d(Fe-oop): 0.012 Å
3bnj-A-517	`sad. +0.01 ruf. -0.89 dom. +0.12 bre. -0.07`	HIS	chainID: A, resSeq: 330, molecule: Cytochrome c-552