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PyDISH No: 05215

PDB: 3bnh,
chainID: A, resSeq: 511
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.75 Å

axial ligand #1: HIS

chainID: A,
resSeq: 172,
Coordination distance[Å]: 2.019
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Wolinella succinogenes

axial ligand #2: HIS

chainID: A,
resSeq: 313,
Coordination distance[Å]: 1.924
molecule: same as ligand #1

List of other hemes in pdb:3bnh

ID of heme Distortion Axial ligands on heme Function & structure
3bnh-A-510
 sad. +0.58
ruf. -0.76
dom. +0.09
bre. -0.19
 LYS chainID: A,
resSeq: 134,
molecule: Cytochrome c-552		 oxidoreductase
oligomeric count: 2
pocket vol.: 427.0 Å3
d(Fe-oop): 0.041 Å
NO2 chainID: A, resSeq: 1,
molecule: NITRITE ION
3bnh-A-512
 sad. -0.31
ruf. -1.16
dom. +0.07
bre. -0.10
 HIS chainID: A,
resSeq: 102,
molecule: Cytochrome c-552		 oxidoreductase
oligomeric count: 2
pocket vol.: 418.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: A, resSeq: 215,
molecule: Cytochrome c-552
3bnh-A-513
 sad. +0.11
ruf. -1.15
dom. +0.33
bre. -0.07
 HIS chainID: A,
resSeq: 299,
molecule: Cytochrome c-552		 oxidoreductase
oligomeric count: 2
pocket vol.: 459.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: A, resSeq: 405,
molecule: Cytochrome c-552
3bnh-A-514
 sad. +0.15
ruf. -1.10
dom. +0.10
bre. -0.21
 HIS chainID: A,
resSeq: 288,
molecule: Cytochrome c-552		 oxidoreductase
oligomeric count: 2
pocket vol.: 526.0 Å3
d(Fe-oop): 0.032 Å
HIS chainID: A, resSeq: 330,
molecule: Cytochrome c-552