Browser

PyDISH No: 03976

PDB: 2kmy,
chainID: A, resSeq: 282
heme type: C

distortion

Protein data

function: electron transporter
experiment: SOLUTION NMR

axial ligand #1: HIS

chainID: A,
resSeq: 25,
Coordination distance[Å]: 2.003
molecule: Cytochrome c3
Organism: Desulfovibrio desulfuricans

axial ligand #2: HIS

chainID: A,
resSeq: 83,
Coordination distance[Å]: 1.935
molecule: same as ligand #1

List of other hemes in pdb:2kmy

ID of heme Distortion Axial ligands on heme Function & structure
2kmy-A-233
sad. +0.10
ruf. -0.32
dom. -0.04
bre. -0.19
HIS chainID: A,
resSeq: 22,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 497.0 Å3
d(Fe-oop): 0.038 Å
HIS chainID: A, resSeq: 34,
molecule: Cytochrome c3
2kmy-A-251
sad. +0.06
ruf. -0.32
dom. -0.13
bre. -0.21
HIS chainID: A,
resSeq: 35,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 522.0 Å3
d(Fe-oop): 0.046 Å
HIS chainID: A, resSeq: 52,
molecule: Cytochrome c3
2kmy-A-305
sad. +0.44
ruf. +0.14
dom. -0.12
bre. -0.20
HIS chainID: A,
resSeq: 69,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 512.0 Å3
d(Fe-oop): 0.054 Å
HIS chainID: A, resSeq: 106,
molecule: Cytochrome c3