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PyDISH No: 03268

PDB: 29yd,
chainID: C, resSeq: 501
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.73 Å
origomeric count: 6

axial ligand #1: HIS

chainID: C,
resSeq: 38,
Coordination distance[Å]: 2.221
molecule: Cytochrome c1
Organism: Rhodobacter capsulatus SB 1003

axial ligand #2: MET

chainID: C,
resSeq: 183,
Coordination distance[Å]: 2.244
molecule: same as ligand #1

List of other hemes in pdb:29yd

ID of heme Distortion Axial ligands on heme Function & structure
29yd-B-501
 sad. +0.02
ruf. +0.24
dom. +0.10
bre. -0.12
 HIS chainID: B,
resSeq: 97,
molecule: Cytochrome b		 electron transporter
oligomeric count: 6
pocket vol.: 492.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: B, resSeq: 198,
molecule: Cytochrome b
29yd-B-502
 sad. -0.46
ruf. -0.49
dom. +0.21
bre. -0.07
 HIS chainID: B,
resSeq: 111,
molecule: Cytochrome b		 electron transporter
oligomeric count: 6
pocket vol.: 485.0 Å3
d(Fe-oop): 0.020 Å
HIS chainID: B, resSeq: 212,
molecule: Cytochrome b
29yd-E-501
 sad. +0.03
ruf. +0.24
dom. +0.11
bre. -0.12
 HIS chainID: E,
resSeq: 97,
molecule: Cytochrome b		 electron transporter
oligomeric count: 6
pocket vol.: 496.0 Å3
d(Fe-oop): 0.005 Å
HIS chainID: E, resSeq: 198,
molecule: Cytochrome b
29yd-E-502
 sad. -0.46
ruf. -0.50
dom. +0.21
bre. -0.08
 HIS chainID: E,
resSeq: 111,
molecule: Cytochrome b		 electron transporter
oligomeric count: 6
pocket vol.: 484.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: E, resSeq: 212,
molecule: Cytochrome b
29yd-F-501
 sad. +0.27
ruf. -0.61
dom. -0.34
bre. -0.14
 HIS chainID: F,
resSeq: 38,
molecule: Cytochrome c1		 electron transporter
oligomeric count: 6
pocket vol.: 508.0 Å3
d(Fe-oop): 0.045 Å
MET chainID: F, resSeq: 183,
molecule: Cytochrome c1