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PyDISH No: 02580

PDB: 1upd,
chainID: A, resSeq: 1109
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.4 Å

axial ligand #1: HIS

chainID: A,
resSeq: 35,
Coordination distance[Å]: 1.963
molecule: CYTOCHROME C3
Organism: DESULFOVIBRIO DESULFURICANS

axial ligand #2: HIS

chainID: A,
resSeq: 52,
Coordination distance[Å]: 1.969
molecule: same as ligand #1

List of other hemes in pdb:1upd

ID of heme Distortion Axial ligands on heme Function & structure
1upd-A-1108
sad. -0.02
ruf. -0.77
dom. -0.20
bre. -0.02
HIS chainID: A,
resSeq: 22,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 442.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: A, resSeq: 34,
molecule: CYTOCHROME C3
1upd-A-1110
sad. +0.16
ruf. -0.20
dom. +0.02
bre. -0.08
HIS chainID: A,
resSeq: 25,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 508.0 Å3
d(Fe-oop): 0.020 Å
HIS chainID: A, resSeq: 83,
molecule: CYTOCHROME C3
1upd-A-1111
sad. +1.04
ruf. +0.53
dom. +0.05
bre. +0.00
HIS chainID: A,
resSeq: 69,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 398.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: A, resSeq: 106,
molecule: CYTOCHROME C3