Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 20485

PDB: 9wtb,
chainID: D, resSeq: 504
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.2 Å
origomeric count: 4

axial ligand #1: HIS

chainID: D,
resSeq: 122,
Coordination distance[Å]: 2.025
molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
Organism: Geobacter sulfurreducens PCA

axial ligand #2: CYS

chainID: D,
resSeq: 239,
Coordination distance[Å]: 2.337
molecule: same as ligand #1

List of other hemes in pdb:9wtb

ID of heme	Distortion	Axial ligands on heme		Function & structure
9wtb-A-501	`sad. -0.09 ruf. -0.74 dom. +0.01 bre. -0.07`	HIS	chainID: A, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 531.0 Å³ d(Fe-oop): 0.047 Å
9wtb-A-501	`sad. -0.09 ruf. -0.74 dom. +0.01 bre. -0.07`	HIS	chainID: A, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-A-502	`sad. -0.50 ruf. -0.71 dom. -0.10 bre. -0.13`	HIS	chainID: A, resSeq: 122, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 401.0 Å³ d(Fe-oop): 0.061 Å
9wtb-A-502	`sad. -0.50 ruf. -0.71 dom. -0.10 bre. -0.13`	CYS	chainID: A, resSeq: 239, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-A-503	`sad. -0.04 ruf. -0.94 dom. +0.03 bre. -0.03`	HIS	chainID: A, resSeq: 174, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 470.0 Å³ d(Fe-oop): 0.019 Å
9wtb-A-503	`sad. -0.04 ruf. -0.94 dom. +0.03 bre. -0.03`	HIS	chainID: A, resSeq: 271, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-A-504	`sad. -0.17 ruf. -0.82 dom. -0.16 bre. -0.06`	HIS	chainID: A, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 406.0 Å³ d(Fe-oop): 0.094 Å
9wtb-A-504	`sad. -0.17 ruf. -0.82 dom. -0.16 bre. -0.06`	HIS	chainID: A, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-A-505	`sad. -0.50 ruf. -0.85 dom. -0.03 bre. -0.08`	HIS	chainID: A, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 355.0 Å³ d(Fe-oop): 0.055 Å
9wtb-A-505	`sad. -0.50 ruf. -0.85 dom. -0.03 bre. -0.08`	HIS	chainID: A, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-B-501	`sad. +0.03 ruf. -0.55 dom. +0.05 bre. -0.20`	HIS	chainID: B, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 513.0 Å³ d(Fe-oop): 0.000 Å
9wtb-B-501	`sad. +0.03 ruf. -0.55 dom. +0.05 bre. -0.20`	HIS	chainID: B, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-B-502	`sad. -0.62 ruf. -0.60 dom. -0.01 bre. -0.06`	HIS	chainID: B, resSeq: 122, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 382.0 Å³ d(Fe-oop): 0.102 Å
9wtb-B-502	`sad. -0.62 ruf. -0.60 dom. -0.01 bre. -0.06`	CYS	chainID: B, resSeq: 239, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-B-503	`sad. +0.01 ruf. -0.88 dom. +0.02 bre. -0.08`	HIS	chainID: B, resSeq: 174, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 438.0 Å³ d(Fe-oop): 0.026 Å
9wtb-B-503	`sad. +0.01 ruf. -0.88 dom. +0.02 bre. -0.08`	HIS	chainID: B, resSeq: 271, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-B-504	`sad. -0.18 ruf. -0.85 dom. -0.14 bre. +0.01`	HIS	chainID: B, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 413.0 Å³ d(Fe-oop): 0.026 Å
9wtb-B-504	`sad. -0.18 ruf. -0.85 dom. -0.14 bre. +0.01`	HIS	chainID: B, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-B-505	`sad. -0.50 ruf. -0.93 dom. -0.02 bre. -0.06`	HIS	chainID: B, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 341.0 Å³ d(Fe-oop): 0.011 Å
9wtb-B-505	`sad. -0.50 ruf. -0.93 dom. -0.02 bre. -0.06`	HIS	chainID: B, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-C-502	`sad. -0.10 ruf. -0.53 dom. +0.04 bre. -0.18`	HIS	chainID: C, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 508.0 Å³ d(Fe-oop): 0.049 Å
9wtb-C-502	`sad. -0.10 ruf. -0.53 dom. +0.04 bre. -0.18`	HIS	chainID: C, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-C-503	`sad. -0.50 ruf. -0.72 dom. +0.09 bre. -0.14`	HIS	chainID: C, resSeq: 122, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 379.0 Å³ d(Fe-oop): 0.163 Å
9wtb-C-503	`sad. -0.50 ruf. -0.72 dom. +0.09 bre. -0.14`	CYS	chainID: C, resSeq: 239, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-C-504	`sad. -0.02 ruf. -0.98 dom. -0.04 bre. -0.06`	HIS	chainID: C, resSeq: 174, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 471.0 Å³ d(Fe-oop): 0.100 Å
9wtb-C-504	`sad. -0.02 ruf. -0.98 dom. -0.04 bre. -0.06`	HIS	chainID: C, resSeq: 271, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-C-505	`sad. -0.07 ruf. -0.65 dom. -0.10 bre. -0.07`	HIS	chainID: C, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 426.0 Å³ d(Fe-oop): 0.035 Å
9wtb-C-505	`sad. -0.07 ruf. -0.65 dom. -0.10 bre. -0.07`	HIS	chainID: C, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-C-506	`sad. -0.49 ruf. -0.89 dom. -0.05 bre. -0.09`	HIS	chainID: C, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 347.0 Å³ d(Fe-oop): 0.098 Å
9wtb-C-506	`sad. -0.49 ruf. -0.89 dom. -0.05 bre. -0.09`	HIS	chainID: C, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-D-503	`sad. -0.07 ruf. -0.47 dom. +0.01 bre. -0.21`	HIS	chainID: D, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 474.0 Å³ d(Fe-oop): 0.009 Å
9wtb-D-503	`sad. -0.07 ruf. -0.47 dom. +0.01 bre. -0.21`	HIS	chainID: D, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-D-505	`sad. +0.02 ruf. -1.02 dom. -0.00 bre. -0.08`	HIS	chainID: D, resSeq: 174, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 444.0 Å³ d(Fe-oop): 0.063 Å
9wtb-D-505	`sad. +0.02 ruf. -1.02 dom. -0.00 bre. -0.08`	HIS	chainID: D, resSeq: 271, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-D-506	`sad. -0.15 ruf. -0.82 dom. -0.14 bre. -0.09`	HIS	chainID: D, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 408.0 Å³ d(Fe-oop): 0.011 Å
9wtb-D-506	`sad. -0.15 ruf. -0.82 dom. -0.14 bre. -0.09`	HIS	chainID: D, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wtb-D-507	`sad. -0.53 ruf. -0.80 dom. -0.01 bre. -0.13`	HIS	chainID: D, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 343.0 Å³ d(Fe-oop): 0.087 Å
9wtb-D-507	`sad. -0.53 ruf. -0.80 dom. -0.01 bre. -0.13`	HIS	chainID: D, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)