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PyDISH No: 20426

PDB: 9wt8,
chainID: D, resSeq: 507
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.75 Å
origomeric count: 4

axial ligand #1: HIS

chainID: D,
resSeq: 174,
Coordination distance[Å]: 1.995
molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
Organism: Geobacter sulfurreducens PCA

axial ligand #2: HIS

chainID: D,
resSeq: 271,
Coordination distance[Å]: 2.003
molecule: same as ligand #1

List of other hemes in pdb:9wt8

ID of heme	Distortion	Axial ligands on heme		Function & structure
9wt8-A-501	`sad. -0.09 ruf. -0.77 dom. +0.02 bre. -0.06`	HIS	chainID: A, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 546.0 Å³ d(Fe-oop): 0.003 Å
9wt8-A-501	`sad. -0.09 ruf. -0.77 dom. +0.02 bre. -0.06`	HIS	chainID: A, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-A-502	`sad. -0.54 ruf. -0.63 dom. +0.04 bre. -0.05`	HIS	chainID: A, resSeq: 122, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 385.0 Å³ d(Fe-oop): 0.034 Å
9wt8-A-502	`sad. -0.54 ruf. -0.63 dom. +0.04 bre. -0.05`	CYS	chainID: A, resSeq: 239, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-A-503	`sad. -0.04 ruf. -1.01 dom. -0.06 bre. -0.02`	HIS	chainID: A, resSeq: 174, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 447.0 Å³ d(Fe-oop): 0.015 Å
9wt8-A-503	`sad. -0.04 ruf. -1.01 dom. -0.06 bre. -0.02`	HIS	chainID: A, resSeq: 271, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-A-504	`sad. -0.09 ruf. -0.80 dom. -0.11 bre. -0.05`	HIS	chainID: A, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 413.0 Å³ d(Fe-oop): 0.027 Å
9wt8-A-504	`sad. -0.09 ruf. -0.80 dom. -0.11 bre. -0.05`	HIS	chainID: A, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-A-505	`sad. -0.46 ruf. -0.88 dom. -0.05 bre. -0.05`	HIS	chainID: A, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 344.0 Å³ d(Fe-oop): 0.029 Å
9wt8-A-505	`sad. -0.46 ruf. -0.88 dom. -0.05 bre. -0.05`	HIS	chainID: A, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-B-502	`sad. +0.03 ruf. -0.64 dom. +0.02 bre. -0.15`	HIS	chainID: B, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 482.0 Å³ d(Fe-oop): 0.008 Å
9wt8-B-502	`sad. +0.03 ruf. -0.64 dom. +0.02 bre. -0.15`	HIS	chainID: B, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-B-503	`sad. -0.55 ruf. -0.60 dom. +0.02 bre. -0.04`	HIS	chainID: B, resSeq: 122, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 378.0 Å³ d(Fe-oop): 0.025 Å
9wt8-B-503	`sad. -0.55 ruf. -0.60 dom. +0.02 bre. -0.04`	CYS	chainID: B, resSeq: 239, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-B-504	`sad. -0.02 ruf. -0.94 dom. -0.03 bre. -0.07`	HIS	chainID: B, resSeq: 174, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 447.0 Å³ d(Fe-oop): 0.031 Å
9wt8-B-504	`sad. -0.02 ruf. -0.94 dom. -0.03 bre. -0.07`	HIS	chainID: B, resSeq: 271, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-B-505	`sad. -0.14 ruf. -0.78 dom. -0.11 bre. -0.09`	HIS	chainID: B, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 416.0 Å³ d(Fe-oop): 0.037 Å
9wt8-B-505	`sad. -0.14 ruf. -0.78 dom. -0.11 bre. -0.09`	HIS	chainID: B, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-B-506	`sad. -0.61 ruf. -0.94 dom. -0.03 bre. -0.03`	HIS	chainID: B, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 347.0 Å³ d(Fe-oop): 0.069 Å
9wt8-B-506	`sad. -0.61 ruf. -0.94 dom. -0.03 bre. -0.03`	HIS	chainID: B, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-C-503	`sad. -0.14 ruf. -0.64 dom. +0.02 bre. -0.13`	HIS	chainID: C, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 515.0 Å³ d(Fe-oop): 0.029 Å
9wt8-C-503	`sad. -0.14 ruf. -0.64 dom. +0.02 bre. -0.13`	HIS	chainID: C, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-C-504	`sad. -0.51 ruf. -0.60 dom. +0.06 bre. -0.07`	HIS	chainID: C, resSeq: 122, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 399.0 Å³ d(Fe-oop): 0.049 Å
9wt8-C-504	`sad. -0.51 ruf. -0.60 dom. +0.06 bre. -0.07`	CYS	chainID: C, resSeq: 239, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-C-505	`sad. -0.01 ruf. -0.99 dom. -0.04 bre. -0.03`	HIS	chainID: C, resSeq: 174, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 481.0 Å³ d(Fe-oop): 0.043 Å
9wt8-C-505	`sad. -0.01 ruf. -0.99 dom. -0.04 bre. -0.03`	HIS	chainID: C, resSeq: 271, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-C-506	`sad. -0.06 ruf. -0.83 dom. -0.10 bre. -0.08`	HIS	chainID: C, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 407.0 Å³ d(Fe-oop): 0.050 Å
9wt8-C-506	`sad. -0.06 ruf. -0.83 dom. -0.10 bre. -0.08`	HIS	chainID: C, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-C-507	`sad. -0.57 ruf. -0.90 dom. -0.10 bre. -0.07`	HIS	chainID: C, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 346.0 Å³ d(Fe-oop): 0.051 Å
9wt8-C-507	`sad. -0.57 ruf. -0.90 dom. -0.10 bre. -0.07`	HIS	chainID: C, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-D-505	`sad. -0.01 ruf. -0.63 dom. -0.01 bre. -0.16`	HIS	chainID: D, resSeq: 62, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 496.0 Å³ d(Fe-oop): 0.002 Å
9wt8-D-505	`sad. -0.01 ruf. -0.63 dom. -0.01 bre. -0.16`	HIS	chainID: D, resSeq: 201, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-D-506	`sad. -0.58 ruf. -0.65 dom. +0.01 bre. -0.06`	HIS	chainID: D, resSeq: 122, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 370.0 Å³ d(Fe-oop): 0.027 Å
9wt8-D-506	`sad. -0.58 ruf. -0.65 dom. +0.01 bre. -0.06`	CYS	chainID: D, resSeq: 239, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-D-508	`sad. -0.10 ruf. -0.82 dom. -0.10 bre. -0.07`	HIS	chainID: D, resSeq: 74, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 394.0 Å³ d(Fe-oop): 0.039 Å
9wt8-D-508	`sad. -0.10 ruf. -0.82 dom. -0.10 bre. -0.07`	HIS	chainID: D, resSeq: 225, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)
9wt8-D-509	`sad. -0.56 ruf. -0.88 dom. -0.07 bre. -0.06`	HIS	chainID: D, resSeq: 263, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)	electron transporter oligomeric count: 4 pocket vol.: 342.0 Å³ d(Fe-oop): 0.036 Å
9wt8-D-509	`sad. -0.56 ruf. -0.88 dom. -0.07 bre. -0.06`	HIS	chainID: D, resSeq: 319, molecule: Cytochrome c,Multiheme cytochrome c selenoprotein (MccSep)