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PyDISH No: 20359

PDB: 9wyk,
chainID: A, resSeq: 801
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.65 Å
origomeric count: 2

axial ligand #1: HIS

chainID: A,
resSeq: 629,
Coordination distance[Å]: 2.704
molecule: Nitric oxide reductase subunit B
EC number: 1.7.2.5
Organism: Achromobacter xylosoxidans

axial ligand #2: HOH

chainID: A,
resSeq: 904,
Coordination distance[Å]: 1.719
molecule: water

List of other hemes in pdb:9wyk

ID of heme Distortion Axial ligands on heme Function & structure
9wyk-A-803
sad. +0.28
ruf. +0.10
dom. +0.06
bre. -0.13
HIS chainID: A,
resSeq: 331,
molecule: Nitric oxide reductase subunit B
oxidoreductase
oligomeric count: 2
pocket vol.: 450.0 Å3
d(Fe-oop): 0.140 Å
HIS chainID: A, resSeq: 631,
molecule: Nitric oxide reductase subunit B
9wyk-B-801
sad. +0.28
ruf. +0.09
dom. +0.07
bre. -0.13
HIS chainID: B,
resSeq: 331,
molecule: Nitric oxide reductase subunit B
oxidoreductase
oligomeric count: 2
pocket vol.: 439.0 Å3
d(Fe-oop): 0.142 Å
HIS chainID: B, resSeq: 631,
molecule: Nitric oxide reductase subunit B
9wyk-B-803
sad. -0.41
ruf. +0.19
dom. +0.24
bre. -0.13
HIS chainID: B,
resSeq: 629,
molecule: Nitric oxide reductase subunit B
oxidoreductase
oligomeric count: 2
pocket vol.: 498.0 Å3
d(Fe-oop): 0.098 Å
HOH chainID: B, resSeq: 906,
molecule: water