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PyDISH No: 20297

PDB: 9wym,
chainID: B, resSeq: 806
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.3 Å
origomeric count: 2

axial ligand #1: HIS

chainID: B,
resSeq: 629,
Coordination distance[Å]: 2.253
molecule: Nitric oxide reductase subunit B
EC number: 1.7.2.5
Organism: Achromobacter xylosoxidans

axial ligand #2: HOH

chainID: B,
resSeq: 916,
Coordination distance[Å]: 1.807
molecule: water

List of other hemes in pdb:9wym

ID of heme Distortion Axial ligands on heme Function & structure
9wym-A-801
sad. +0.24
ruf. -0.02
dom. +0.05
bre. -0.03
HIS chainID: A,
resSeq: 331,
molecule: Nitric oxide reductase subunit B
oxidoreductase
oligomeric count: 2
pocket vol.: 421.0 Å3
d(Fe-oop): 0.077 Å
HIS chainID: A, resSeq: 631,
molecule: Nitric oxide reductase subunit B
9wym-A-803
sad. -0.41
ruf. +0.15
dom. -0.13
bre. -0.14
HIS chainID: A,
resSeq: 629,
molecule: Nitric oxide reductase subunit B
oxidoreductase
oligomeric count: 2
pocket vol.: 491.0 Å3
d(Fe-oop): 0.205 Å
HOH chainID: A, resSeq: 916,
molecule: water
9wym-B-802
sad. +0.29
ruf. -0.05
dom. +0.06
bre. -0.19
HIS chainID: B,
resSeq: 331,
molecule: Nitric oxide reductase subunit B
oxidoreductase
oligomeric count: 2
pocket vol.: 420.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: B, resSeq: 631,
molecule: Nitric oxide reductase subunit B