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PyDISH No: 20254

PDB: 9si8,
chainID: B, resSeq: 601
heme type: B

distortion

Protein data

function: lyase
experiment: ELECTRON MICROSCOPY
resolution: 2.47 Å
origomeric count: 6

axial ligand #1: CYS

chainID: B,
resSeq: 52,
Coordination distance[Å]: 2.312
molecule: Cystathionine beta-synthase
EC number: 4.2.1.22
Organism: Homo sapiens

axial ligand #2: HIS

chainID: B,
resSeq: 65,
Coordination distance[Å]: 2.18
molecule: same as ligand #1

List of other hemes in pdb:9si8

ID of heme Distortion Axial ligands on heme Function & structure
9si8-F-601
 sad. -0.62
ruf. -0.92
dom. +0.01
bre. -0.09
 CYS chainID: F,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 6
pocket vol.: 518.0 Å3
d(Fe-oop): 0.060 Å
HIS chainID: F, resSeq: 65,
molecule: Cystathionine beta-synthase
9si8-E-601
 sad. -0.62
ruf. -0.92
dom. +0.01
bre. -0.09
 CYS chainID: E,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 6
pocket vol.: 522.0 Å3
d(Fe-oop): 0.061 Å
HIS chainID: E, resSeq: 65,
molecule: Cystathionine beta-synthase
9si8-D-601
 sad. -0.62
ruf. -0.92
dom. +0.01
bre. -0.09
 CYS chainID: D,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 6
pocket vol.: 507.0 Å3
d(Fe-oop): 0.060 Å
HIS chainID: D, resSeq: 65,
molecule: Cystathionine beta-synthase
9si8-C-601
 sad. -0.62
ruf. -0.92
dom. +0.01
bre. -0.09
 CYS chainID: C,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 6
pocket vol.: 544.0 Å3
d(Fe-oop): 0.060 Å
HIS chainID: C, resSeq: 65,
molecule: Cystathionine beta-synthase
9si8-A-601
 sad. -0.62
ruf. -0.92
dom. +0.01
bre. -0.09
 CYS chainID: A,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 6
pocket vol.: 528.0 Å3
d(Fe-oop): 0.060 Å
HIS chainID: A, resSeq: 65,
molecule: Cystathionine beta-synthase