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PyDISH No: 20120

PDB: 9sfj,
chainID: a, resSeq: 601
heme type: B

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.52 Å
origomeric count: 8

axial ligand #1: HIS

chainID: a,
resSeq: 186,
Coordination distance[Å]: 1.949
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
EC number: 7.1.1.7
Organism: Escherichia coli K-12

axial ligand #2: MET

chainID: a,
resSeq: 393,
Coordination distance[Å]: 2.799
molecule: same as ligand #1

List of other hemes in pdb:9sfj

ID of heme Distortion Axial ligands on heme Function & structure
9sfj-A-601
sad. -0.39
ruf. +0.51
dom. -0.21
bre. -0.16
HIS chainID: A,
resSeq: 186,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
translocase
oligomeric count: 8
pocket vol.: 466.0 Å3
d(Fe-oop): 0.158 Å
MET chainID: A, resSeq: 393,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
9sfj-A-604
sad. +1.00
ruf. +0.09
dom. -0.51
bre. -0.08
GLU chainID: A,
resSeq: 445,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
translocase
oligomeric count: 8
pocket vol.: 433.0 Å3
d(Fe-oop): 0.093 Å
Not assigned.
9sfj-a-603
sad. +1.03
ruf. +0.17
dom. -0.41
bre. -0.09
GLU chainID: a,
resSeq: 445,
molecule: Cytochrome bd-I ubiquinol oxidase subunit 1
translocase
oligomeric count: 8
pocket vol.: 438.0 Å3
d(Fe-oop): 0.003 Å
Not assigned.